RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PEX13Q92968 403 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 TMEM216Q9P0N5 145 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 OBSL1O75147 1896 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 SNNO75324 88 aaPredicted RBP26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 ABCG1P45844 678 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 OCRLQ01968 901 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 FPGSQ05932 587 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 OVGP1Q12889 678 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 TMC7Q7Z402 723 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 SP7Q8TDD2 431 aaPredicted RBP26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 PRKAG2Q9UGJ0 569 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 SLC39A10Q9ULF5 831 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 RIMKLBQ9ULI2 386 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 LZTS1Q9Y250 596 aa26.57■■□□□ 1.84
CCDC88C-205ENST00000553403 TYW5A2RUC4 315 aaKnown RBP26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 SLC7A4O43246 635 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 TBL1XO60907 577 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 DNAJC8O75937 253 aaPredicted RBP26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 NDST3O95803 873 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 F7P08709 466 aaPredicted RBP26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 PFKLP17858 780 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 SLC1A2P43004 574 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 SLC7A9P82251 487 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 BNIP1Q12981 228 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 STX3Q13277 289 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 CYTH1Q15438 398 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 GAREM2Q75VX8 874 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 GALNT7Q86SF2 657 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 DENND6AQ8IWF6 608 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 EMILIN2Q9BXX0 1053 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 MUC3BQ9H195 1237 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 CAB39LQ9H9S4 337 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 GGT7Q9UJ14 662 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 LSM7Q9UK45 103 aaKnown RBP26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 FBXO5Q9UKT4 447 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 ZNF510Q9Y2H8 683 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 CAPN7Q9Y6W3 813 aa26.56■■□□□ 1.84
CCDC88C-205ENST00000553403 C1RP00736 705 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 C8AP07357 584 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 CR2P20023 1033 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 GLDCP23378 1020 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 CD151P48509 253 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 IRX4P78413 519 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 MPP1Q00013 466 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 CTBP1Q13363 440 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 USP10Q14694 798 aaKnown RBP26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 MBLAC2Q68D91 279 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 LMNTD2Q8IXW0 634 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 ELMOD1Q8N336 334 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 KREMEN2Q8NCW0 462 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 RFWD2Q8NHY2 731 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 BADQ92934 168 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 TMA16Q96EY4 203 aaKnown RBP26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 TRIB3Q96RU7 358 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 THAP1Q9NVV9 213 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 PCDH10Q9P2E7 1040 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 TLK1Q9UKI8 766 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 ARIH1Q9Y4X5 557 aaPredicted RBP26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 IRAK3Q9Y616 596 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 ALPK3Q96L96 1907 aa26.55■■□□□ 1.84
CCDC88C-205ENST00000553403 GJB3O75712 270 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 CDC25CP30307 473 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 ACVR1Q04771 509 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 PCLAFQ15004 111 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 TAF1BQ53T94 588 aaPredicted RBP26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 TMEM240Q5SV17 173 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 ZNF470Q6ECI4 717 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 CCDC91Q7Z6B0 441 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 HS6ST3Q8IZP7 471 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 PLD6Q8N2A8 252 aaKnown RBP26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 MICALL1Q8N3F8 863 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 ACVR1CQ8NER5 493 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 OR13J1Q8NGT2 312 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 RAD9AQ99638 391 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 MFSD1Q9H3U5 465 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 COPG2Q9UBF2 871 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 MID2Q9UJV3 735 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 CHKBQ9Y259 395 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 ACTL7AQ9Y615 435 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 CCDC195A0A1B0GUA6 201 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 H0Y626 953 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 CBX4O00257 560 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 INSIG1O15503 277 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 LDB2O43679 373 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 LUC7L3O95232 432 aaKnown RBP26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 COL6A2P12110 1019 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 SYN1P17600 705 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 CYP4F8P98187 520 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 ILF2Q12905 390 aaKnown RBP26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 DLG2Q15700 870 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 SPDYAQ5MJ70 313 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 CES4AQ5XG92 561 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 PSRC1Q6PGN9 363 aaPredicted RBP26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 HTR3DQ70Z44 454 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 PPP1R14CQ8TAE6 165 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 LRRC37BQ96QE4 947 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 GCNAQ96QF7 691 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 NUDCD1Q96RS6 583 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 NOD2Q9HC29 1040 aa26.54■■□□□ 1.84
CCDC88C-205ENST00000553403 FAM95CA0A1B0GW59 222 aa26.53■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms