RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 OLR1P78380 273 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 MAMLD1Q13495 774 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 NFE2L1Q14494 772 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 KCNJ11Q14654 390 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 LEXMQ3ZCV2 418 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 SEL1L3Q68CR1 1132 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 PNCKQ6P2M8 343 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 CYS1Q717R9 158 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 CARNMT1Q8N4J0 409 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 FAM156AQ8NDB6 213 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 FEZF2Q8TBJ5 459 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 DYNC2LI1Q8TCX1 351 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 ASPSCR1Q9BZE9 553 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 POPDC2Q9HBU9 364 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 ZC4H2Q9NQZ6 224 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 UCKL1Q9NWZ5 548 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 SNX7Q9UNH6 387 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 CNTNAP2Q9UHC6 1331 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 A0A0G2JMP0 313 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 TCAF2A6NFQ2 919 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 H0YIN7 160 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 USP12O75317 370 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 PRKD3O94806 890 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 SNX4O95219 450 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 STMN1P16949 149 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 KCNA6P17658 529 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 OSBPP22059 807 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 ZNF76P36508 570 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 PSMC5P62195 406 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 PSMC6P62333 389 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 CNTN2Q02246 1040 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 TATDN1Q6P1N9 297 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 PTAR1Q7Z6K3 402 aaPredicted RBP12.53□□□□□ -0.4
USP3-203ENST00000538686 GATAD2AQ86YP4 633 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 FAM178BQ8IXR5 827 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 ZNF781Q8N8C0 355 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 TMEM35BQ8NCS4 154 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 ACTL9Q8TC94 416 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 TOE1Q96GM8 510 aaKnown RBP12.53□□□□□ -0.4
USP3-203ENST00000538686 ST6GAL2Q96JF0 529 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 PCDHAC1Q9H158 963 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 MMP27Q9H306 513 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 ZNF556Q9HAH1 456 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 ZNF277Q9NRM2 450 aaPredicted RBP12.53□□□□□ -0.4
USP3-203ENST00000538686 B3GNT2Q9NY97 397 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.53□□□□□ -0.4
USP3-203ENST00000538686 CD300AQ9UGN4 299 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 CDYLQ9Y232 598 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 A3GALT2U3KPV4 340 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 ARFGEF1Q9Y6D6 1849 aa12.53□□□□□ -0.4
USP3-203ENST00000538686 NDUFS2O75306 463 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 CD4P01730 458 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 IFNA16P05015 189 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 ITGB3P05106 788 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 SPATA31C1P0DKV0 1188 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 CSH1P0DML2 217 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 CSH2P0DML3 217 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 IL7P13232 177 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 CYP2A7P20853 494 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 ATP2B4P23634 1241 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 CRHBPP24387 322 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 LTKP29376 864 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 GDF10P55107 478 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 ACTR2P61160 394 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 YWHAZP63104 245 aaKnown RBP12.52□□□□□ -0.4
USP3-203ENST00000538686 ACAP2Q15057 778 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 TRAPPC3LQ5T215 181 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 C12orf60Q5U649 245 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 HACD2Q6Y1H2 254 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 CHST15Q7LFX5 561 aaPredicted RBP12.52□□□□□ -0.4
USP3-203ENST00000538686 CATSPER4Q7RTX7 472 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 ERO1BQ86YB8 467 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 PLCZ1Q86YW0 608 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 DDIASQ8IXT1 998 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 DEPDC1BQ8WUY9 529 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 CANT1Q8WVQ1 401 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 TMEM206Q9H813 350 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 ACAD9Q9H845 621 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 TBC1D13Q9NVG8 400 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 INTS10Q9NVR2 710 aaKnown RBP12.52□□□□□ -0.4
USP3-203ENST00000538686 MID2Q9UJV3 735 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 RIPK3Q9Y572 518 aa12.52□□□□□ -0.4
USP3-203ENST00000538686 DHRS12A0PJE2 317 aa12.52□□□□□ -0.41
USP3-203ENST00000538686 HMX2A2RU54 273 aa12.52□□□□□ -0.41
USP3-203ENST00000538686 USP17L3A6NCW0 530 aa12.52□□□□□ -0.41
USP3-203ENST00000538686 USP17L4A6NCW7 530 aa12.52□□□□□ -0.41
USP3-203ENST00000538686 HMX3A6NHT5 357 aa12.52□□□□□ -0.41
USP3-203ENST00000538686 A8MX80 341 aa12.52□□□□□ -0.41
USP3-203ENST00000538686 CTDSP2O14595 271 aa12.52□□□□□ -0.41
USP3-203ENST00000538686 TBX1O43435 398 aa12.52□□□□□ -0.41
USP3-203ENST00000538686 GCP02774 474 aa12.52□□□□□ -0.41
USP3-203ENST00000538686 ARNTP27540 789 aa12.52□□□□□ -0.41
USP3-203ENST00000538686 GNPDA1P46926 289 aa12.52□□□□□ -0.41
USP3-203ENST00000538686 YAP1P46937 504 aaKnown RBP12.52□□□□□ -0.41
USP3-203ENST00000538686 MCCD1P59942 119 aaPredicted RBP12.52□□□□□ -0.41
USP3-203ENST00000538686 SNRPFP62306 86 aaKnown RBP12.52□□□□□ -0.41
USP3-203ENST00000538686 C1QBPQ07021 282 aaKnown RBP12.52□□□□□ -0.41
USP3-203ENST00000538686 RIPPLY1Q0D2K3 151 aa12.52□□□□□ -0.41
USP3-203ENST00000538686 ACOX1Q15067 660 aa12.52□□□□□ -0.41
USP3-203ENST00000538686 TOR2AQ5JU69 321 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms