RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 LSSP48449 732 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 ZNF143P52747 638 aaPredicted RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 ADKP55263 362 aaKnown RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 YBEYP58557 167 aaPredicted RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 RHOAP61586 193 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 RPL7AP62424 266 aaKnown RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 GABREP78334 506 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 OGDHQ02218 1023 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 TLE3Q04726 772 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 RAD51Q06609 339 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 ISXQ2M1V0 245 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 KLHL40Q2TBA0 621 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 TMEM52BQ4KMG9 183 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 INO80DQ53TQ3 878 aaPredicted RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 PRRT3Q5FWE3 981 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 EFHC2Q5JST6 749 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 PERM1Q5SV97 790 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 PPP1R15BQ5SWA1 713 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 ZCCHC8Q6NZY4 707 aaKnown RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 CRTC1Q6UUV9 634 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 CLEC17AQ6ZS10 378 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 RBM43Q6ZSC3 357 aaKnown RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 APTXQ7Z2E3 356 aaKnown RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 PHACTR4Q8IZ21 702 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 TP53I13Q8NBR0 393 aaPredicted RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 NEK11Q8NG66 645 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 CXorf40AQ8TE69 158 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 CASKIN2Q8WXE0 1202 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 ARHGEF26Q96DR7 871 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 HIC2Q96JB3 615 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 FCRL3Q96P31 734 aaPredicted RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 MCEEQ96PE7 176 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 IL12RB2Q99665 862 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 AGPAT1Q99943 283 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 WRAP53Q9BUR4 548 aaKnown RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 CLPBQ9H078 707 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 SEPT11Q9NVA2 429 aaKnown RBP8.56□□□□□ -1.04
USP28-203ENST00000537490 EVA1BQ9NVM1 165 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 SPASTQ9UBP0 616 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 LHX3Q9UBR4 397 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 COQ6Q9Y2Z9 468 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 MFHAS1Q9Y4C4 1052 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 DAAM1Q9Y4D1 1078 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 WDFY3Q8IZQ1 3526 aa8.56□□□□□ -1.04
USP28-203ENST00000537490 CELSR3Q9NYQ7 3312 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 PTPRQQ9UMZ3 2332 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 LRRC10BA6NIK2 292 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 J3KR12 359 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 MUSKO15146 869 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 ATXN7O15265 892 aaPredicted RBP8.55□□□□□ -1.04
USP28-203ENST00000537490 YY2O15391 372 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 LZTS3O60299 673 aaPredicted RBP8.55□□□□□ -1.04
USP28-203ENST00000537490 BUB1BO60566 1050 aaPredicted RBP8.55□□□□□ -1.04
USP28-203ENST00000537490 C1QL1O75973 258 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 DXOO77932 396 aaKnown RBP8.55□□□□□ -1.04
USP28-203ENST00000537490 PIGNO95427 931 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 IGSF6O95976 241 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 CELA2BP08218 269 aaPredicted RBP8.55□□□□□ -1.04
USP28-203ENST00000537490 TSHRP16473 764 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 EIF4A3P38919 411 aaKnown RBP8.55□□□□□ -1.04
USP28-203ENST00000537490 THOP1P52888 689 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 YPEL5P62699 121 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 UBXN1Q04323 297 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 SERINC3Q13530 473 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 PTK2BQ14289 1009 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 NCAPHQ15003 741 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 NR0B2Q15466 257 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 FAXCQ5TGI0 409 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 ACAD10Q6JQN1 1059 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 DNAJC24Q6P3W2 148 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 PCSK4Q6UW60 755 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 NYAP1Q6ZVC0 841 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 GPR155Q7Z3F1 870 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 SLC35F3Q8IY50 421 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 MCOLN2Q8IZK6 566 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 LSMEM2Q8N112 164 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 UMODL1-AS1Q8N2C9 162 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 ZNF248Q8NDW4 579 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 BTN2A2Q8WVV5 523 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 SLC39A7Q92504 469 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 EXOC2Q96KP1 924 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 ZNF578Q96N58 590 aaPredicted RBP8.55□□□□□ -1.04
USP28-203ENST00000537490 ERGIC2Q96RQ1 377 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 LGMNQ99538 433 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 EPAS1Q99814 870 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 CNPY3Q9BT09 278 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 LRRC61Q9BV99 259 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 BOCQ9BWV1 1114 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 CPEB1Q9BZB8 566 aaKnown RBP8.55□□□□□ -1.04
USP28-203ENST00000537490 HSD3B7Q9H2F3 369 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 CATSPERBQ9H7T0 1116 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 POLR1BQ9H9Y6 1135 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 ASCL3Q9NQ33 180 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 GPATCH2LQ9NWQ4 482 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 TAS2R14Q9NYV8 317 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 DKK3Q9UBP4 350 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 APOBEC3BQ9UH17 382 aaKnown RBP8.55□□□□□ -1.04
USP28-203ENST00000537490 ENTPD2Q9Y5L3 495 aa8.55□□□□□ -1.04
USP28-203ENST00000537490 TSPAN11A1L157 253 aa8.54□□□□□ -1.04
USP28-203ENST00000537490 PMS2P1A4D2B8 440 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms