RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 KIF5AQ12840 1032 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 GRIK2Q13002 908 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 TEAD4Q15561 434 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 TMEM259Q4ZIN3 620 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 SETMARQ53H47 684 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-208ENST00000532560 RALGPS1Q5JS13 557 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 NAPEPLDQ6IQ20 393 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 KIAA1161Q6NSJ0 714 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 TIGD7Q6NT04 549 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-208ENST00000532560 MTERF4Q7Z6M4 381 aaKnown RBP15.21■□□□□ 0.03
CPSF1-208ENST00000532560 PRPF39Q86UA1 669 aaKnown RBP15.21■□□□□ 0.03
CPSF1-208ENST00000532560 HORMAD1Q86X24 394 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 TEX26Q8N6G2 289 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 LRRC57Q8N9N7 239 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 MAML1Q92585 1016 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 RNF25Q96BH1 459 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-208ENST00000532560 SLC6A18Q96N87 628 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 RTKNQ9BST9 563 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 MAK16Q9BXY0 300 aaKnown RBP15.21■□□□□ 0.03
CPSF1-208ENST00000532560 ATP13A3Q9H7F0 1226 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 FSCN3Q9NQT6 498 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 SHROOM3Q8TF72 1996 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 A0A1W2PQU0 124 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 GRID2IPA4D2P6 1211 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 DYNC1I1O14576 645 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 AREL1O15033 823 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 SPINT1O43278 529 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 TSPAN6O43657 245 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 MAP3K6O95382 1288 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 CR2P20023 1033 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 SERPINA4P29622 427 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 MAT2AP31153 395 aaKnown RBP15.2■□□□□ 0.02
CPSF1-208ENST00000532560 ID4P47928 161 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 SUOXP51687 545 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 PPIDQ08752 370 aaKnown RBP15.2■□□□□ 0.02
CPSF1-208ENST00000532560 SLC10A2Q12908 348 aaPredicted RBP15.2■□□□□ 0.02
CPSF1-208ENST00000532560 HNRNPDQ14103 355 aaKnown RBP15.2■□□□□ 0.02
CPSF1-208ENST00000532560 PUM1Q14671 1186 aaKnown RBP eCLIP15.2■□□□□ 0.02
CPSF1-208ENST00000532560 ZNF284Q2VY69 593 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 MARC1Q5VT66 337 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 BRAT1Q6PJG6 821 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 SPOCD1Q6ZMY3 1216 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 RFX6Q8HWS3 928 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 RCOR2Q8IZ40 523 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 PGBD5Q8N414 524 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 EXD1Q8NHP7 514 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 KRT35Q92764 455 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 RBM41Q96IZ5 413 aaKnown RBP15.2■□□□□ 0.02
CPSF1-208ENST00000532560 SERAC1Q96JX3 654 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 OLFM3Q96PB7 478 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 NUDCD1Q96RS6 583 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 SUV39H2Q9H5I1 410 aa15.2■□□□□ 0.02
CPSF1-208ENST00000532560 LAMA1P25391 3075 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.19■□□□□ 0.02
CPSF1-208ENST00000532560 A0A1B0GVT2 93 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 MACROD2A1Z1Q3 448 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 C4orf47A7E2U8 309 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 UPK3BL1B0FP48 263 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 UPK3BL2E5RIL1 263 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 TRAFD1O14545 582 aaPredicted RBP15.19■□□□□ 0.02
CPSF1-208ENST00000532560 MATN3O15232 486 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 GJB3O75712 270 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 PCDH8O95206 1070 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 ZRANB2O95218 330 aaKnown RBP eCLIP15.19■□□□□ 0.02
CPSF1-208ENST00000532560 CTNNA2P26232 953 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 CSNK1EP49674 416 aaKnown RBP15.19■□□□□ 0.02
CPSF1-208ENST00000532560 SCNN1BP51168 640 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 ATXN3P54252 364 aaPredicted RBP15.19■□□□□ 0.02
CPSF1-208ENST00000532560 RPS21P63220 83 aaKnown RBP15.19■□□□□ 0.02
CPSF1-208ENST00000532560 BNC1Q01954 994 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 TFDP2Q14188 446 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 PPP2R5EQ16537 467 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 TFDP3Q5H9I0 405 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 CFAP58Q5T655 872 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 SEL1L3Q68CR1 1132 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 ALG1LQ6GMV1 187 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 IL27RAQ6UWB1 636 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 CAMK1DQ8IU85 385 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 MINDY1Q8N5J2 469 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 KIAA1524Q8TCG1 905 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 SPOCK2Q92563 424 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 ECHDC3Q96DC8 303 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 FEM1CQ96JP0 617 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 GTPBP2Q9BX10 602 aaKnown RBP15.19■□□□□ 0.02
CPSF1-208ENST00000532560 TSGA10Q9BZW7 698 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 DNAAF2Q9NVR5 837 aaKnown RBP15.19■□□□□ 0.02
CPSF1-208ENST00000532560 TRIM10Q9UDY6 481 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 AMACRQ9UHK6 382 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 ZFR2Q9UPR6 939 aaKnown RBP15.19■□□□□ 0.02
CPSF1-208ENST00000532560 ITM2BQ9Y287 266 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 HEY1Q9Y5J3 304 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 ADGRG1Q9Y653 693 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 ADAMTS9Q9P2N4 1935 aa15.19■□□□□ 0.02
CPSF1-208ENST00000532560 ANKRD36A6QL64 1941 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 hCG_1818297A0A087WSY0 165 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 A0A0U1RQJ8 604 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 A0A1W2PR77 199 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 CCDC66A2RUB6 948 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 PRAMEF26H0Y7S4 382 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 VILLO15195 856 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms