RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 IGFALSP35858 605 aa17.03■□□□□ 0.32
CPSF1-207ENST00000531727 OGDHQ02218 1023 aa17.03■□□□□ 0.32
CPSF1-207ENST00000531727 TYRO3Q06418 890 aa17.03■□□□□ 0.32
CPSF1-207ENST00000531727 SOWAHCQ53LP3 525 aaPredicted RBP17.03■□□□□ 0.32
CPSF1-207ENST00000531727 CDCP2Q5VXM1 449 aa17.03■□□□□ 0.32
CPSF1-207ENST00000531727 PPP1R2P3Q6NXS1 205 aa17.03■□□□□ 0.32
CPSF1-207ENST00000531727 SNIP1Q8TAD8 396 aaKnown RBP17.03■□□□□ 0.32
CPSF1-207ENST00000531727 BTN2A2Q8WVV5 523 aa17.03■□□□□ 0.32
CPSF1-207ENST00000531727 VCPIP1Q96JH7 1222 aa17.03■□□□□ 0.32
CPSF1-207ENST00000531727 C1QTNF7Q9BXJ2 289 aa17.03■□□□□ 0.32
CPSF1-207ENST00000531727 CPEB1Q9BZB8 566 aaKnown RBP17.03■□□□□ 0.32
CPSF1-207ENST00000531727 LRRC19Q9H756 370 aa17.03■□□□□ 0.32
CPSF1-207ENST00000531727 TAS2R14Q9NYV8 317 aa17.03■□□□□ 0.32
CPSF1-207ENST00000531727 LOC400499M0QZD8 3231 aa17.03■□□□□ 0.32
CPSF1-207ENST00000531727 URB1O60287 2271 aaKnown RBP17.02■□□□□ 0.32
CPSF1-207ENST00000531727 INSIG1O15503 277 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 TEX33O43247 280 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 TM7SF2O76062 418 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 TIMP2P16035 220 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 TNFAIP3P21580 790 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 SUOXP51687 545 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 THOP1P52888 689 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 TPI1P60174 286 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 YPEL5P62699 121 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 EIF2B5Q13144 721 aaKnown RBP17.02■□□□□ 0.32
CPSF1-207ENST00000531727 MAMLD1Q13495 774 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 PTK2BQ14289 1009 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 CYTH1Q15438 398 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 LRRC69Q6ZNQ3 347 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 VPS36Q86VN1 386 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 DNAAF5Q86Y56 855 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 TP53I13Q8NBR0 393 aaPredicted RBP17.02■□□□□ 0.32
CPSF1-207ENST00000531727 IFI44Q8TCB0 444 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 CXorf40AQ8TE69 158 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 CRELD1Q96HD1 420 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 EXOC2Q96KP1 924 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 DEPDC7Q96QD5 511 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 PDFQ9HBH1 243 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 PARVAQ9NVD7 372 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 DONSONQ9NYP3 566 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 NCKIPSDQ9NZQ3 722 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 UBA2Q9UBT2 640 aaPredicted RBP17.02■□□□□ 0.32
CPSF1-207ENST00000531727 SALL4Q9UJQ4 1053 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 AP4E1Q9UPM8 1137 aa17.02■□□□□ 0.32
CPSF1-207ENST00000531727 TMCO5BA8MYB1 307 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 TOR1BO14657 336 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 RIOK3O14730 519 aaKnown RBP17.01■□□□□ 0.31
CPSF1-207ENST00000531727 TPP1O14773 563 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 RRP8O43159 456 aaKnown RBP17.01■□□□□ 0.31
CPSF1-207ENST00000531727 PIGNO95427 931 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 ITIH2P19823 946 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 ITPKBP27987 946 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 ACTN2P35609 894 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 NDST2P52849 883 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 ELP6Q0PNE2 266 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 GRM3Q14832 879 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 KLHL40Q2TBA0 621 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 DEFB133Q30KQ1 61 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 TMEM52BQ4KMG9 183 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 HCAR2Q8TDS4 363 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 LMX1AQ8TE12 382 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 FGF11Q92914 225 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 TBATAQ96M53 351 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 NCAPGQ9BPX3 1015 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 WRAP53Q9BUR4 548 aaKnown RBP17.01■□□□□ 0.31
CPSF1-207ENST00000531727 NAT10Q9H0A0 1025 aaKnown RBP17.01■□□□□ 0.31
CPSF1-207ENST00000531727 RTN4Q9NQC3 1192 aaKnown RBP17.01■□□□□ 0.31
CPSF1-207ENST00000531727 MBNL1Q9NR56 388 aaKnown RBP17.01■□□□□ 0.31
CPSF1-207ENST00000531727 GPATCH2LQ9NWQ4 482 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 SPASTQ9UBP0 616 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 APOBEC3BQ9UH17 382 aaKnown RBP17.01■□□□□ 0.31
CPSF1-207ENST00000531727 PCDHB1Q9Y5F3 818 aa17.01■□□□□ 0.31
CPSF1-207ENST00000531727 TSPAN11A1L157 253 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 EIF3CLB5ME19 914 aaKnown RBP17■□□□□ 0.31
CPSF1-207ENST00000531727 J3KR12 359 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 PRAMEF11O60813 436 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 XPAP23025 273 aaPredicted RBP17■□□□□ 0.31
CPSF1-207ENST00000531727 PSMA2P25787 234 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 CDKN3Q16667 212 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 TBC1D25Q3MII6 688 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 PLEKHA7Q6IQ23 1121 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 MACC1Q6ZN28 852 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 PHACTR4Q8IZ21 702 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 RBFAQ8N0V3 343 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 MAPK15Q8TD08 544 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 EIF3CQ99613 913 aaKnown RBP17■□□□□ 0.31
CPSF1-207ENST00000531727 IL12RB2Q99665 862 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 BPIFA3Q9BQP9 254 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 ABCG4Q9H172 646 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 DHX35Q9H5Z1 703 aaKnown RBP17■□□□□ 0.31
CPSF1-207ENST00000531727 PNMA8BQ9ULN7 279 aaPredicted RBP17■□□□□ 0.31
CPSF1-207ENST00000531727 KNTC1P50748 2209 aa17■□□□□ 0.31
CPSF1-207ENST00000531727 LRRK1Q38SD2 2015 aa16.99■□□□□ 0.31
CPSF1-207ENST00000531727 COL27A1Q8IZC6 1860 aaPredicted RBP16.99■□□□□ 0.31
CPSF1-207ENST00000531727 ARHGAP42A6NI28 874 aa16.99■□□□□ 0.31
CPSF1-207ENST00000531727 LRRC53A6NM62 1247 aa16.99■□□□□ 0.31
CPSF1-207ENST00000531727 EEF2KO00418 725 aaKnown RBP16.99■□□□□ 0.31
CPSF1-207ENST00000531727 ATMINO43313 823 aaPredicted RBP16.99■□□□□ 0.31
CPSF1-207ENST00000531727 LZTS3O60299 673 aaPredicted RBP16.99■□□□□ 0.31
CPSF1-207ENST00000531727 CSO75390 466 aaKnown RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms