RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 C3orf20Q8ND61 904 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 LMX1AQ8TE12 382 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 GRAMD1AQ96CP6 724 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 SELENOOQ9BVL4 669 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 BOCQ9BWV1 1114 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 TTYH3Q9C0H2 523 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 ASCL3Q9NQ33 180 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 ADAM22Q9P0K1 906 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 SPASTQ9UBP0 616 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 DKK3Q9UBP4 350 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 APOBEC3BQ9UH17 382 aaKnown RBP11.5□□□□□ -0.57
VPS28-214ENST00000531032 PNMA8BQ9ULN7 279 aaPredicted RBP11.5□□□□□ -0.57
VPS28-214ENST00000531032 MFHAS1Q9Y4C4 1052 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 MGAQ8IWI9 3026 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 HELZ2Q9BYK8 2649 aaKnown RBP11.49□□□□□ -0.57
VPS28-214ENST00000531032 CPED1A4D0V7 1026 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 SIGLEC16A6NMB1 481 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 WASH4PA8MWX3 477 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 CCP110O43303 1012 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 MMP20O60882 483 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 GCATO75600 419 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 TM7SF2O76062 418 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 IGSF6O95976 241 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 PRB1P04280 392 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 CALB1P05937 261 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 TPM2P07951 284 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 EPHB2P29323 1055 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 ZNF143P52747 638 aaPredicted RBP11.49□□□□□ -0.57
VPS28-214ENST00000531032 THOP1P52888 689 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 YBEYP58557 167 aaPredicted RBP11.49□□□□□ -0.57
VPS28-214ENST00000531032 RHOAP61586 193 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 RAD51Q06609 339 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 C19orf57Q0VDD7 668 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 NR0B2Q15466 257 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 EFHC2Q5JST6 749 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 LRRC73Q5JTD7 316 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 MACC1Q6ZN28 852 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 EFL1Q7Z2Z2 1120 aaKnown RBP11.49□□□□□ -0.57
VPS28-214ENST00000531032 VPS36Q86VN1 386 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 PHACTR4Q8IZ21 702 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 TP53I13Q8NBR0 393 aaPredicted RBP11.49□□□□□ -0.57
VPS28-214ENST00000531032 TPCN2Q8NHX9 752 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 CXorf40AQ8TE69 158 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 HMCESQ96FZ2 354 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 IL12RB2Q99665 862 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 EPAS1Q99814 870 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 LRRC61Q9BV99 259 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 C1QTNF7Q9BXJ2 289 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 CPEB1Q9BZB8 566 aaKnown RBP11.49□□□□□ -0.57
VPS28-214ENST00000531032 KLC2Q9H0B6 622 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 TCEAL2Q9H3H9 227 aaPredicted RBP11.49□□□□□ -0.57
VPS28-214ENST00000531032 LMBRD1Q9NUN5 540 aa11.49□□□□□ -0.57
VPS28-214ENST00000531032 ATMQ13315 3056 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 A0A1W2PNU3 283 aaPredicted RBP11.48□□□□□ -0.57
VPS28-214ENST00000531032 RASA4BC9J798 803 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 LMO7DNF2Z398 122 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 RASA4O43374 803 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 TCEA3O75764 348 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 TIMP2P16035 220 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 EIF4A3P38919 411 aaKnown RBP11.48□□□□□ -0.57
VPS28-214ENST00000531032 RPIAP49247 311 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 SUOXP51687 545 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 AIF1P55008 147 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 UCNP55089 124 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 CXADRP78310 365 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 C1QBPQ07021 282 aaKnown RBP11.48□□□□□ -0.57
VPS28-214ENST00000531032 SERINC3Q13530 473 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 SYCP1Q15431 976 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 PARP15Q460N3 678 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 TMEM52BQ4KMG9 183 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 PRRT3Q5FWE3 981 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 PERM1Q5SV97 790 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 C6orf132Q5T0Z8 1188 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 PCSK4Q6UW60 755 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 RBM44Q6ZP01 1051 aaKnown RBP11.48□□□□□ -0.57
VPS28-214ENST00000531032 CLEC17AQ6ZS10 378 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 RBM43Q6ZSC3 357 aaKnown RBP11.48□□□□□ -0.57
VPS28-214ENST00000531032 ZNF354CQ86Y25 554 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 SLC35F3Q8IY50 421 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 UMODL1-AS1Q8N2C9 162 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 HCAR2Q8TDS4 363 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 NAT6Q93015 286 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 NAF1Q96HR8 494 aaKnown RBP11.48□□□□□ -0.57
VPS28-214ENST00000531032 SLC13A1Q9BZW2 595 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 CATSPERBQ9H7T0 1116 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 MBNL1Q9NR56 388 aaKnown RBP11.48□□□□□ -0.57
VPS28-214ENST00000531032 THSD1Q9NS62 852 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 FANCLQ9NW38 375 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 LHX3Q9UBR4 397 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 FZD10Q9ULW2 581 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 SATB2Q9UPW6 733 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 ENTPD2Q9Y5L3 495 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 LRRK1Q38SD2 2015 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 RP1P56715 2156 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 CFAP46Q8IYW2 2715 aa11.48□□□□□ -0.57
VPS28-214ENST00000531032 LRP4O75096 1905 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 TSPAN11A1L157 253 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 LGALS16A8MUM7 142 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 MUSKO15146 869 aa11.47□□□□□ -0.57
VPS28-214ENST00000531032 FGF10O15520 208 aaPredicted RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms