RNA–Protein interactions for RNA: ENST00000528396.5

CAPN1-215, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-215	ENST00000528396	GAREM1	Q9H706	876 aa		13.54	□□□□□ -0.24
CAPN1-215	ENST00000528396	SCUBE2	Q9NQ36	999 aa		13.54	□□□□□ -0.24
CAPN1-215	ENST00000528396	TFR2	Q9UP52	801 aa		13.54	□□□□□ -0.24
CAPN1-215	ENST00000528396	HEY1	Q9Y5J3	304 aa		13.54	□□□□□ -0.24
CAPN1-215	ENST00000528396	FADS3	Q9Y5Q0	445 aa		13.54	□□□□□ -0.24
CAPN1-215	ENST00000528396	ALG6	Q9Y672	507 aa		13.54	□□□□□ -0.24
CAPN1-215	ENST00000528396	SLCO1B1	Q9Y6L6	691 aa		13.54	□□□□□ -0.24
CAPN1-215	ENST00000528396	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	RNF103	O00237	685 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	VILL	O15195	856 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	AP1G1	O43747	822 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	NRDC	O43847	1150 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	MAFK	O60675	156 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	MAP3K6	O95382	1288 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	GARS	P41250	739 aa	Known RBP	13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	CSNK1D	P48730	415 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	VAV2	P52735	878 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	POLR2L	P62875	67 aa	Known RBP	13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	DYNLT1	P63172	113 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	NSUN2	Q08J23	767 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	ELP6	Q0PNE2	266 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	KIF5A	Q12840	1032 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	IFI16	Q16666	785 aa	Known RBP	13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	HLA-B	Q31612	363 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	LRRC73	Q5JTD7	316 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	BRAT1	Q6PJG6	821 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	ERMP1	Q7Z2K6	904 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	CAMK1D	Q8IU85	385 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	ACRBP	Q8NEB7	543 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	HCAR2	Q8TDS4	363 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	FAF2	Q96CS3	445 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	MYOC	Q99972	504 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	C1QTNF7	Q9BXJ2	289 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	NT5M	Q9NPB1	228 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	GDF3	Q9NR23	364 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	DKK3	Q9UBP4	350 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	TTLL3	Q9Y4R7	772 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	SNX11	Q9Y5W9	270 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	LAMA1	P25391	3075 aa		13.53	□□□□□ -0.24
CAPN1-215	ENST00000528396	ZNF487	B1APH4	448 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	TLR4	O00206	839 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	DFNA5	O60443	496 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	HNRNPA2B1	P22626	353 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	NFKBIA	P25963	317 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	ABL2	P42684	1182 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	RGR	P47804	291 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	GBE1	Q04446	702 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	GALNT2	Q10471	571 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	SLC14A1	Q13336	389 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	TFDP2	Q14188	446 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	SUZ12	Q15022	739 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	ZNF284	Q2VY69	593 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	PPM1J	Q5JR12	505 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	SEL1L3	Q68CR1	1132 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	VSIG1	Q86XK7	387 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	PQLC3	Q8N755	202 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	TPCN2	Q8NHX9	752 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	SETD7	Q8WTS6	366 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	PDCD6IP	Q8WUM4	868 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	ORAI3	Q9BRQ5	295 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	SLC17A9	Q9BYT1	436 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	GOLPH3	Q9H4A6	298 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	EBF2	Q9HAK2	575 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	DNAAF2	Q9NVR5	837 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	ITM2B	Q9Y287	266 aa		13.52	□□□□□ -0.25
CAPN1-215	ENST00000528396	NCOR2	Q9Y618	2525 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	ADAMTS9	Q9P2N4	1935 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	IGLON5	A6NGN9	336 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	UPK3BL1	B0FP48	263 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	UPK3BL2	E5RIL1	263 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	PPP1R12A	O14974	1030 aa	Predicted RBP	13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	MATN3	O15232	486 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	ZRANB2	O95218	330 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	TIMP2	P16035	220 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	CCNC	P24863	283 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	CETN2	P41208	172 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	ARRB1	P49407	418 aa	Predicted RBP	13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	NOVA1	P51513	510 aa	Known RBP	13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	FAM193A	P78312	1265 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	OVGP1	Q12889	678 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	HNRNPD	Q14103	355 aa	Known RBP	13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	PDK1	Q15118	436 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	UGP2	Q16851	508 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	TMEM259	Q4ZIN3	620 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	CCDC181	Q5TID7	509 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	KAZN	Q674X7	775 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	BZW1	Q7L1Q6	419 aa	Known RBP	13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	IQCH	Q86VS3	1027 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	MFSD2A	Q8NA29	543 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	KIAA1524	Q8TCG1	905 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	KLHDC7B	Q96G42	594 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	RBM41	Q96IZ5	413 aa	Known RBP	13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	DESI2	Q9BSY9	194 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	WRAP53	Q9BUR4	548 aa	Known RBP	13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	POLR1E	Q9GZS1	481 aa	Known RBP	13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	FZD3	Q9NPG1	666 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	TM7SF3	Q9NS93	570 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396	PCDHB9	Q9Y5E1	797 aa		13.51	□□□□□ -0.25
CAPN1-215	ENST00000528396		A0A1W2PQ67	120 aa		13.5	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms