RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 HNRNPDQ14103 355 aaKnown RBP10.25□□□□□ -0.77
MCF2-209ENST00000520602 FLOT2Q14254 428 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 TRMT5Q32P41 509 aaKnown RBP10.25□□□□□ -0.77
MCF2-209ENST00000520602 ALFQ53S48 1182 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 GPR62Q9BZJ7 368 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 TMEM161AQ9NX61 479 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 CCDC167Q9P0B6 97 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 SUN2Q9UH99 717 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 VWA7Q9Y334 891 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 PRKCGP05129 697 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 UBTFL6P0CB48 400 aaPredicted RBP10.25□□□□□ -0.77
MCF2-209ENST00000520602 SLC1A2P43004 574 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 RPS24P62847 133 aaKnown RBP10.25□□□□□ -0.77
MCF2-209ENST00000520602 SLC34A1Q06495 639 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 KLC1Q07866 573 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 C16orf89Q6UX73 402 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 ZNF534Q76KX8 674 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 CNTD1Q8N815 330 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 ZSCAN18Q8TBC5 510 aaPredicted RBP10.25□□□□□ -0.77
MCF2-209ENST00000520602 SPDL1Q96EA4 605 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 CCDC126Q96EE4 140 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 CDRT15Q96T59 188 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 CDH19Q9H159 772 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 HIPK3Q9H422 1215 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 EFCAB1Q9HAE3 211 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 ANLNQ9NQW6 1124 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 GKN1Q9NS71 199 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 LTA4HP09960 611 aaKnown RBP10.25□□□□□ -0.77
MCF2-209ENST00000520602 CD68P34810 354 aaPredicted RBP10.25□□□□□ -0.77
MCF2-209ENST00000520602 ACVRL1P37023 503 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 ETV4P43268 484 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 RECQLP46063 649 aaPredicted RBP10.25□□□□□ -0.77
MCF2-209ENST00000520602 PFKFB4Q16877 469 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 USP41Q3LFD5 358 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 XKR4Q5GH76 650 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 TMCO4Q5TGY1 634 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 LINGO4Q6UY18 593 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 RIPOR1Q6ZS17 1223 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 ULK2Q8IYT8 1036 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 ELMOD1Q8N336 334 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 KYQ8NBH2 561 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 ARNTL2Q8WYA1 636 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 YME1L1Q96TA2 773 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 APOL5Q9BWW9 433 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 PLK2Q9NYY3 685 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 TRMT6Q9UJA5 497 aaKnown RBP10.25□□□□□ -0.77
MCF2-209ENST00000520602 TLR6Q9Y2C9 796 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 RAP2CQ9Y3L5 183 aa10.25□□□□□ -0.77
MCF2-209ENST00000520602 MOXD2PA6NHM9 499 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 SYN3O14994 580 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 TACR2P21452 398 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 ATP5F1P24539 256 aaPredicted RBP10.24□□□□□ -0.77
MCF2-209ENST00000520602 SCAPQ12770 1279 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 FBXO48Q5FWF7 155 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 TPGS1Q6ZTW0 290 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 OR6K2Q8NGY2 324 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 FUBP3Q96I24 572 aaKnown RBP eCLIP10.24□□□□□ -0.77
MCF2-209ENST00000520602 CYP2S1Q96SQ9 504 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 SIKE1Q9BRV8 207 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 YIPF3Q9GZM5 350 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 SIRPGQ9P1W8 387 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 SLCO1B7G3V0H7 640 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 KIF3CO14782 793 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 UBDO15205 165 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 SP100P23497 879 aaPredicted RBP10.24□□□□□ -0.77
MCF2-209ENST00000520602 IDH3AP50213 366 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 SMAD3P84022 425 aaKnown RBP10.24□□□□□ -0.77
MCF2-209ENST00000520602 RNF219Q5W0B1 726 aaPredicted RBP10.24□□□□□ -0.77
MCF2-209ENST00000520602 GALNT4Q8N4A0 578 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 ZCWPW1Q9H0M4 648 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 UPF3AQ9H1J1 476 aaKnown RBP10.24□□□□□ -0.77
MCF2-209ENST00000520602 TMEM39AQ9NV64 488 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 NUP205Q92621 2012 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 ANGPT2O15123 496 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 TPBGLP0DKB5 382 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 COX4I1P13073 169 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 CCR10P46092 362 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 EPHB3P54753 998 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 USP46P62068 366 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 PLIN5Q00G26 463 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 RAD51Q06609 339 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 IRF5Q13568 498 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 IKBKEQ14164 716 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 PCLAFQ15004 111 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 TMEM154Q6P9G4 183 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 BNC2Q6ZN30 1099 aaPredicted RBP10.24□□□□□ -0.77
MCF2-209ENST00000520602 LRRC74BQ6ZQY2 392 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 MRPL10Q7Z7H8 261 aaKnown RBP10.24□□□□□ -0.77
MCF2-209ENST00000520602 ZC3HC1Q86WB0 502 aaKnown RBP10.24□□□□□ -0.77
MCF2-209ENST00000520602 CEP70Q8NHQ1 597 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 MRPS31Q92665 395 aaKnown RBP10.24□□□□□ -0.77
MCF2-209ENST00000520602 ULK4Q96C45 1275 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 MRPL57Q9BQC6 102 aaKnown RBP10.24□□□□□ -0.77
MCF2-209ENST00000520602 EFHD1Q9BUP0 239 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 ADGRE3Q9BY15 652 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 Q9H521 79 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 MID1IP1Q9NPA3 183 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 VPS45Q9NRW7 570 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 CATSPERZQ9NTU4 200 aa10.24□□□□□ -0.77
MCF2-209ENST00000520602 DLGAP2Q9P1A6 1054 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 1210.6 ms