RNA–Protein interactions for RNA: ENST00000496711.5

GARNL3-220, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 1 (best)

Gene GARNL3, Length 1,859 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-220ENST00000496711 ASPHQ12797 758 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 LBRQ14739 615 aaKnown RBP13.16□□□□□ -0.3
GARNL3-220ENST00000496711 TCTN1Q2MV58 587 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 KHDC1Q4VXA5 237 aaKnown RBP13.16□□□□□ -0.3
GARNL3-220ENST00000496711 ACSBG2Q5FVE4 666 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 TMCO4Q5TGY1 634 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 PRSS55Q6UWB4 352 aaPredicted RBP13.16□□□□□ -0.3
GARNL3-220ENST00000496711 TMEM173Q86WV6 379 aaPredicted RBP13.16□□□□□ -0.3
GARNL3-220ENST00000496711 LRRC43Q8N309 656 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 PGBD5Q8N414 524 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 GIPC2Q8TF65 315 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 ANKRD27Q96NW4 1050 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 GPR78Q96P69 363 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 CDK5RAP1Q96SZ6 601 aaKnown RBP13.16□□□□□ -0.3
GARNL3-220ENST00000496711 TTLL2Q9BWV7 592 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 UXTQ9UBK9 157 aaPredicted RBP13.16□□□□□ -0.3
GARNL3-220ENST00000496711 CEP350Q5VT06 3117 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 GBF1Q92538 1859 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 MEI4A8MW99 385 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 PRAMEF11O60813 436 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 TM7SF2O76062 418 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 CHRNGP07510 517 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 MPSTP25325 297 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 ETFBP38117 255 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 COPAP53621 1224 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 DLG1Q12959 904 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 MSLNQ13421 630 aaPredicted RBP13.16□□□□□ -0.3
GARNL3-220ENST00000496711 ZNF235Q14590 738 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 IHHQ14623 411 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 FSCBQ5H9T9 825 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 SIRPB2Q5JXA9 342 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 TLDC1Q6P9B6 456 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 GALNT7Q86SF2 657 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 SCUBE1Q8IWY4 988 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 CRIPAKQ8N1N5 446 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 OR13J1Q8NGT2 312 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 KCNV2Q8TDN2 545 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 BCL7CQ8WUZ0 217 aaPredicted RBP13.16□□□□□ -0.3
GARNL3-220ENST00000496711 WDR60Q8WVS4 1066 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 STMN2Q93045 179 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 NXNL1Q96CM4 212 aa13.16□□□□□ -0.3
GARNL3-220ENST00000496711 RSRC1Q96IZ7 334 aaKnown RBP13.16□□□□□ -0.3
GARNL3-220ENST00000496711 POLR1EQ9GZS1 481 aaKnown RBP13.16□□□□□ -0.3
GARNL3-220ENST00000496711 MRPL46Q9H2W6 279 aaKnown RBP13.16□□□□□ -0.3
GARNL3-220ENST00000496711 MROH6A6NGR9 719 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 AURKAO14965 403 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 SLC7A4O43246 635 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 CIB2O75838 187 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 PIGNO95427 931 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 PSMG1O95456 288 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 ATXN1LP0C7T5 689 aaKnown RBP13.15□□□□□ -0.3
GARNL3-220ENST00000496711 NCF2P19878 526 aaPredicted RBP13.15□□□□□ -0.3
GARNL3-220ENST00000496711 ACVRL1P37023 503 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 LEPRP48357 1165 aaKnown RBP13.15□□□□□ -0.3
GARNL3-220ENST00000496711 PRKAA1Q13131 559 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 C5orf22Q49AR2 442 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 SLC9B1Q4ZJI4 515 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 RBM20Q5T481 1227 aaKnown RBP13.15□□□□□ -0.3
GARNL3-220ENST00000496711 C6orf163Q5TEZ5 329 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 CNSTQ6PJW8 725 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 TAS1R1Q7RTX1 841 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 TMC7Q7Z402 723 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 NET1Q7Z628 596 aaPredicted RBP13.15□□□□□ -0.3
GARNL3-220ENST00000496711 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.15□□□□□ -0.3
GARNL3-220ENST00000496711 ULK2Q8IYT8 1036 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 LGI2Q8N0V4 545 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 GIMAP7Q8NHV1 300 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 AGR3Q8TD06 166 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 MAPK15Q8TD08 544 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 MYEOVQ96EZ4 313 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 TSPAN17Q96FV3 270 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 OMDQ99983 421 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 SEMA3CQ99985 751 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 MRPL57Q9BQC6 102 aaKnown RBP13.15□□□□□ -0.3
GARNL3-220ENST00000496711 MFSD1Q9H3U5 465 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 PDFQ9HBH1 243 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.15□□□□□ -0.3
GARNL3-220ENST00000496711 PLXNA4Q9HCM2 1894 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 ANAPC1Q9H1A4 1944 aa13.15□□□□□ -0.3
GARNL3-220ENST00000496711 LOC285095A0A1B0GVY8 99 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.14□□□□□ -0.31
GARNL3-220ENST00000496711 TTC24A2A3L6 582 aaPredicted RBP13.14□□□□□ -0.31
GARNL3-220ENST00000496711 MATN2O00339 956 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 HDAC3O15379 428 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 DLX3O60479 287 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 MAP2K2P36507 400 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 CPOXP36551 454 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 RPL14P50914 215 aaKnown RBP13.14□□□□□ -0.31
GARNL3-220ENST00000496711 KCNQ1P51787 676 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 NAGLUP54802 743 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 RCN1Q15293 331 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 TRMT5Q32P41 509 aaKnown RBP13.14□□□□□ -0.31
GARNL3-220ENST00000496711 ARL13AQ5H913 290 aaPredicted RBP13.14□□□□□ -0.31
GARNL3-220ENST00000496711 METTL21CQ5VZV1 264 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 SEL1L3Q68CR1 1132 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 CILP2Q8IUL8 1156 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 LMNTD2Q8IXW0 634 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 POU5F2Q8N7G0 328 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 PDZD8Q8NEN9 1154 aa13.14□□□□□ -0.31
GARNL3-220ENST00000496711 FBXO22Q8NEZ5 403 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms