RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 BRAT1Q6PJG6 821 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 ARHGAP36Q6ZRI8 547 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 ZNF662Q6ZS27 426 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 SRLQ86TD4 932 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 NETO2Q8NC67 525 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 TSEN2Q8NCE0 465 aaKnown RBP16.57■□□□□ 0.24
SF3A1-209ENST00000496189 PCDH19Q8TAB3 1148 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 C1orf216Q8TAB5 229 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 HCAR2Q8TDS4 363 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 PSKH2Q96QS6 385 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 FSCN3Q9NQT6 498 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 DKK3Q9UBP4 350 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 AMFRQ9UKV5 643 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 NUMA1Q14980 2115 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 GON4LQ3T8J9 2241 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 CCDC66A2RUB6 948 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 DCDC2BA2VCK2 349 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 CDX4O14627 284 aaPredicted RBP16.56■□□□□ 0.24
SF3A1-209ENST00000496189 APOL1O14791 398 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 MFSD11O43934 449 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 MAFKO60675 156 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 ZRANB2O95218 330 aaKnown RBP eCLIP16.56■□□□□ 0.24
SF3A1-209ENST00000496189 IL4RP24394 825 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 CETN2P41208 172 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 GARSP41250 739 aaKnown RBP16.56■□□□□ 0.24
SF3A1-209ENST00000496189 MMP13P45452 471 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 TAS2R38P59533 333 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 POLR2LP62875 67 aaKnown RBP16.56■□□□□ 0.24
SF3A1-209ENST00000496189 OVGP1Q12889 678 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 SLC14A1Q13336 389 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 NCBP2-AS2Q69YL0 99 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 BZW1Q7L1Q6 419 aaKnown RBP16.56■□□□□ 0.24
SF3A1-209ENST00000496189 PEX26Q7Z412 305 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 RFX6Q8HWS3 928 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 KATNAL2Q8IYT4 538 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 RCOR2Q8IZ40 523 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 CCNYQ8ND76 341 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 CXorf40AQ8TE69 158 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 RAPGEF5Q92565 580 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 FAF2Q96CS3 445 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 SLC6A18Q96N87 628 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 RNF157Q96PX1 679 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 C1QTNF7Q9BXJ2 289 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 GOLPH3Q9H4A6 298 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 SUV39H2Q9H5I1 410 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 GAREM1Q9H706 876 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 TRIM10Q9UDY6 481 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 GUCA1BQ9UMX6 200 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 ANKRD6Q9Y2G4 727 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 FADS3Q9Y5Q0 445 aa16.56■□□□□ 0.24
SF3A1-209ENST00000496189 PI4KAP42356 2102 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 A0A1W2PQ67 120 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 GRID2IPA4D2P6 1211 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 VILLO15195 856 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 SLC31A1O15431 190 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 PIGNO95427 931 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 HNRNPA2B1P22626 353 aaKnown RBP16.55■□□□□ 0.24
SF3A1-209ENST00000496189 CCNCP24863 283 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 SLC10A7Q0GE19 358 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 GALNT2Q10471 571 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 TFDP2Q14188 446 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 SUZ12Q15022 739 aaKnown RBP16.55■□□□□ 0.24
SF3A1-209ENST00000496189 RALGPS1Q5JS13 557 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 IQCHQ86VS3 1027 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 CCDC50Q8IVM0 306 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 UBL4BQ8N7F7 174 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 LRRC57Q8N9N7 239 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 MFSD2AQ8NA29 543 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 FAM174AQ8TBP5 190 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 RNF25Q96BH1 459 aaPredicted RBP16.55■□□□□ 0.24
SF3A1-209ENST00000496189 RBM41Q96IZ5 413 aaKnown RBP16.55■□□□□ 0.24
SF3A1-209ENST00000496189 ALS2CR12Q96Q35 445 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 SCUBE2Q9NQ36 999 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 GDF3Q9NR23 364 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 DNAAF2Q9NVR5 837 aaKnown RBP16.55■□□□□ 0.24
SF3A1-209ENST00000496189 PPP2R2CQ9Y2T4 447 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 HEY1Q9Y5J3 304 aa16.55■□□□□ 0.24
SF3A1-209ENST00000496189 MIF4GDA9UHW6 222 aaKnown RBP16.54■□□□□ 0.24
SF3A1-209ENST00000496189 PPP1R12AO14974 1030 aaPredicted RBP16.54■□□□□ 0.24
SF3A1-209ENST00000496189 ZSCAN12O43309 604 aa16.54■□□□□ 0.24
SF3A1-209ENST00000496189 KRT10P13645 584 aa16.54■□□□□ 0.24
SF3A1-209ENST00000496189 CTNNA1P35221 906 aaKnown RBP16.54■□□□□ 0.24
SF3A1-209ENST00000496189 ARRB1P49407 418 aaPredicted RBP16.54■□□□□ 0.24
SF3A1-209ENST00000496189 FOXK2Q01167 660 aa16.54■□□□□ 0.24
SF3A1-209ENST00000496189 ITKQ08881 620 aa16.54■□□□□ 0.24
SF3A1-209ENST00000496189 HNRNPDQ14103 355 aaKnown RBP16.54■□□□□ 0.24
SF3A1-209ENST00000496189 HLA-BQ31612 363 aa16.54■□□□□ 0.24
SF3A1-209ENST00000496189 TP53INP2Q8IXH6 220 aa16.54■□□□□ 0.24
SF3A1-209ENST00000496189 OXR1Q8N573 874 aa16.54■□□□□ 0.24
SF3A1-209ENST00000496189 EXD1Q8NHP7 514 aa16.54■□□□□ 0.24
SF3A1-209ENST00000496189 SLC17A9Q9BYT1 436 aa16.54■□□□□ 0.24
SF3A1-209ENST00000496189 POLR1EQ9GZS1 481 aaKnown RBP16.54■□□□□ 0.24
SF3A1-209ENST00000496189 LZTFL1Q9NQ48 299 aa16.54■□□□□ 0.24
SF3A1-209ENST00000496189 AMACRQ9UHK6 382 aa16.54■□□□□ 0.24
SF3A1-209ENST00000496189 TTLL3Q9Y4R7 772 aa16.54■□□□□ 0.24
SF3A1-209ENST00000496189 PCDHA3Q9Y5H8 950 aa16.54■□□□□ 0.24
SF3A1-209ENST00000496189 A0A0U1RQJ8 604 aa16.53■□□□□ 0.24
SF3A1-209ENST00000496189 UPK3BL1B0FP48 263 aa16.53■□□□□ 0.24
SF3A1-209ENST00000496189 UPK3BL2E5RIL1 263 aa16.53■□□□□ 0.24
SF3A1-209ENST00000496189 MATN3O15232 486 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms