RNA–Protein interactions for RNA: ENST00000496076.1

CLTC-208, Transcript of clathrin heavy chain, human

TSL 2

Gene CLTC, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLTC-208	ENST00000496076	CNTF	P26441	200 aa		4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	RPL3	P39023	403 aa	Known RBP	4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	DPP6	P42658	865 aa		4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	CYP26C1	Q6V0L0	522 aa		4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	GALNT15	Q8N3T1	639 aa		4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	RFWD2	Q8NHY2	731 aa		4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	FAM71B	Q8TC56	605 aa		4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	C2CD4C	Q8TF44	421 aa		4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	KCNJ9	Q92806	393 aa		4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	MPP4	Q96JB8	637 aa		4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	MSTO1	Q9BUK6	570 aa		4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	CADM1	Q9BY67	442 aa	Known RBP	4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	TP63	Q9H3D4	680 aa	Predicted RBP	4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	MAP3K20	Q9NYL2	800 aa	Known RBP	4.37	□□□□□ -1.71
CLTC-208	ENST00000496076	LRRFIP2	Q9Y608	721 aa	Known RBP	4.37	□□□□□ -1.71
CLTC-208	ENST00000496076		A0A1B0GU03	582 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	FAM172BP	A6NC97	362 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	HMX3	A6NHT5	357 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	NCAM2	O15394	837 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	IRAK2	O43187	625 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	ASNA1	O43681	348 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	GYS1	P13807	737 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	TNFAIP3	P21580	790 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	FMO4	P31512	558 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	ZNF132	P52740	706 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	ARL4C	P56559	192 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	PTK2B	Q14289	1009 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	BTBD16	Q32M84	506 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	SETMAR	Q53H47	684 aa	Predicted RBP	4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	LIN54	Q6MZP7	749 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	CLEC4G	Q6UXB4	293 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	FOXL2NB	Q6ZUU3	175 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	DGLUCY	Q7Z3D6	616 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	MAATS1	Q7Z4T9	603 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	MYPOP	Q86VE0	399 aa	Predicted RBP	4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	RILPL2	Q969X0	211 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	TBATA	Q96M53	351 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	DDX23	Q9BUQ8	820 aa	Known RBP	4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	SLC22A11	Q9NSA0	550 aa		4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	FBXO9	Q9UK97	447 aa	Predicted RBP	4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	COL2A1	P02458	1487 aa	Predicted RBP	4.36	□□□□□ -1.71
CLTC-208	ENST00000496076	FAM90A18P	A6NE21	464 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	FAM90A16P	A6NEW6	464 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	NPIPB13	A6NJU9	1138 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	FAM90A9P	A6NNJ1	464 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	NPIPB5	A8MRT5	1133 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	FAM90A5P	A8MXJ8	464 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	HNRNPCL2	B2RXH8	293 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	NPIPB4	C9JG80	1138 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	P2RY10	O00398	339 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	TIMM23	O14925	209 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	EPB41L2	O43491	1005 aa	Known RBP	4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	HEXIM1	O94992	359 aa	Known RBP	4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	PMS2P2	O95744	297 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	POLB	P06746	335 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	FAM90A15P	P0C7V4	464 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	FAM90A14P	P0C7W9	464 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	GEMIN4	P57678	1058 aa	Known RBP	4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	FOXD4	Q12950	439 aa	Predicted RBP	4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	G3BP1	Q13283	466 aa	Known RBP eCLIP	4.35	□□□□□ -1.71	3e-8	■■■■□ 23.3
CLTC-208	ENST00000496076	SIM2	Q14190	667 aa	Predicted RBP	4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	MAPRE1	Q15691	268 aa	Known RBP	4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	TBRG1	Q3YBR2	411 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	TICAM2	Q86XR7	235 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	TMC8	Q8IU68	726 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	USP13	Q92995	863 aa	Predicted RBP	4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	MTBP	Q96DY7	904 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	TMEM51	Q9NW97	253 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	IFT80	Q9P2H3	777 aa	Predicted RBP	4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	ZNF69	Q9UC07	566 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	CRYL1	Q9Y2S2	319 aa		4.35	□□□□□ -1.71
CLTC-208	ENST00000496076	CHL1	O00533	1208 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	KIF1C	O43896	1103 aa	Known RBP	4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	AMBP	P02760	352 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	IGHV4-30-4	P0DP06	118 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	KCNA5	P22460	613 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	SSTR2	P30874	369 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	NLRP5	P59047	1200 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	FOXO1	Q12778	655 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	CALCRL	Q16602	461 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	TRIM60	Q495X7	471 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	ACCSL	Q4AC99	568 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	GXYLT1	Q4G148	440 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	ANKRD45	Q5TZF3	282 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	PLA2G4F	Q68DD2	849 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	NCAPH2	Q6IBW4	605 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	KLHL17	Q6TDP4	642 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	NEK10	Q6ZWH5	1172 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	MOGAT3	Q86VF5	341 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	CCDC117	Q8IWD4	279 aa	Predicted RBP	4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	SCN4B	Q8IWT1	228 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	PPHLN1	Q8NEY8	458 aa	Known RBP	4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	OR1N1	Q8NGS0	311 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	STT3B	Q8TCJ2	826 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	SKA1	Q96BD8	255 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	TEFM	Q96QE5	360 aa	Known RBP	4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	GGA3	Q9NZ52	723 aa		4.34	□□□□□ -1.71
CLTC-208	ENST00000496076	IGKV3D-20	A0A0C4DH25	116 aa		4.33	□□□□□ -1.72
CLTC-208	ENST00000496076	TARSL2	A2RTX5	802 aa	Known RBP	4.33	□□□□□ -1.72
CLTC-208	ENST00000496076		B9A039	149 aa		4.33	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms