RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 MTAPQ13126 283 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 PRPF4BQ13523 1007 aaKnown RBP6.91□□□□□ -1.3
VIM-207ENST00000495528 HABP2Q14520 560 aaPredicted RBP6.91□□□□□ -1.3
VIM-207ENST00000495528 CALCRLQ16602 461 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 FAM187BQ17R55 369 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 SLC5A9Q2M3M2 681 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 GLRA4Q5JXX5 417 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 LCE5AQ5TCM9 118 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 TANGO2Q6ICL3 276 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 ZNF852Q6ZMS4 543 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 MRGPREQ86SM8 312 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 Q8N1X5 172 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 NACC2Q96BF6 587 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 LRIG1Q96JA1 1093 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 MRGPRX1Q96LB2 322 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 CCDC43Q96MW1 224 aaKnown RBP6.91□□□□□ -1.3
VIM-207ENST00000495528 ZNF396Q96N95 335 aaPredicted RBP6.91□□□□□ -1.3
VIM-207ENST00000495528 MTMR9Q96QG7 549 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 NELL2Q99435 816 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 POLD4Q9HCU8 107 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 MTRRQ9UBK8 725 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 NOL7Q9UMY1 257 aaKnown RBP6.91□□□□□ -1.3
VIM-207ENST00000495528 L1RE1Q9UN81 338 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 ATP6V1DQ9Y5K8 247 aa6.91□□□□□ -1.3
VIM-207ENST00000495528 TMEM200CA6NKL6 621 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 MARCH11A6NNE9 402 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 TMEM189-UBE2V1I3L0A0 370 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 I3L4J1 428 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 ACKR2O00590 384 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 NCAM2O15394 837 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 MED24O75448 989 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 SPDEFO95238 335 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 PRKCBP05771 671 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 RHOP08100 348 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 TDGF1P13385 188 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 CEBPBP17676 345 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 PTPN2P17706 415 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 MAKP20794 623 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 FCARP24071 287 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 TKTP29401 623 aaKnown RBP6.9□□□□□ -1.3
VIM-207ENST00000495528 MCM7P33993 719 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 BRCC3P46736 316 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 RPS9P46781 194 aaKnown RBP6.9□□□□□ -1.3
VIM-207ENST00000495528 ARHGAP8P85298 464 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 GALEQ14376 348 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 CYP2A13Q16696 494 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 UPP1Q16831 310 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 CD300EQ496F6 205 aaPredicted RBP6.9□□□□□ -1.3
VIM-207ENST00000495528 LY6G5CQ5SRR4 150 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 PDXDC1Q6P996 788 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 RTL10Q7L3V2 364 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 CATSPER3Q86XQ3 398 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 ZBTB8OSQ8IWT0 167 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 FAM46DQ8NEK8 389 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 ZNF461Q8TAF7 563 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 SECISBP2LQ93073 1101 aaKnown RBP6.9□□□□□ -1.3
VIM-207ENST00000495528 TMEM125Q96AQ2 219 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 ELSPBP1Q96BH3 223 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 TCEAL4Q96EI5 215 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 PPP1R10Q96QC0 940 aaKnown RBP6.9□□□□□ -1.3
VIM-207ENST00000495528 MED15Q96RN5 788 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 USP28Q96RU2 1077 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 PRMT8Q9NR22 394 aaPredicted RBP6.9□□□□□ -1.3
VIM-207ENST00000495528 PIH1D1Q9NWS0 290 aaKnown RBP6.9□□□□□ -1.3
VIM-207ENST00000495528 GDE1Q9NZC3 331 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.9□□□□□ -1.3
VIM-207ENST00000495528 CTTNBP2NLQ9P2B4 639 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 CFAP45Q9UL16 551 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 NDRG2Q9UN36 371 aaKnown RBP6.9□□□□□ -1.3
VIM-207ENST00000495528 GDAQ9Y2T3 454 aa6.9□□□□□ -1.3
VIM-207ENST00000495528 DMXL1Q9Y485 3027 aa6.9□□□□□ -1.31
VIM-207ENST00000495528 MYH15Q9Y2K3 1946 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 MTCL1Q9Y4B5 1905 aaKnown RBP6.89□□□□□ -1.31
VIM-207ENST00000495528 ARHGEF37A1IGU5 675 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 WDR27A2RRH5 827 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 PHGDHO43175 533 aaKnown RBP6.89□□□□□ -1.31
VIM-207ENST00000495528 TBC1D4O60343 1298 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 NEMFO60524 1076 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 UNC5CO95185 931 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 SEC24AO95486 1093 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 CYP11B2P19099 503 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 SLC7A1P30825 629 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 CCR2P41597 374 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 ARPP19P56211 112 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 ROR1Q01973 937 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 LPAL2Q16609 132 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 MAPK6Q16659 721 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 PREPLQ4J6C6 727 aaPredicted RBP6.89□□□□□ -1.31
VIM-207ENST00000495528 RILPL1Q5EBL4 403 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 FAM78AQ5JUQ0 283 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 RNF220Q5VTB9 566 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 RHOUQ7L0Q8 258 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 CHST15Q7LFX5 561 aaPredicted RBP6.89□□□□□ -1.31
VIM-207ENST00000495528 Q8NA96 180 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 MCPH1Q8NEM0 835 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 DEPTORQ8TB45 409 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 NEU4Q8WWR8 484 aaPredicted RBP6.89□□□□□ -1.31
VIM-207ENST00000495528 ADPGKQ9BRR6 497 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 RTKNQ9BST9 563 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 CNPPD1Q9BV87 410 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms