RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 ARID2Q68CP9 1835 aa11.81□□□□□ -0.52
HDAC4-210ENST00000493582 STRCQ7RTU9 1775 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 A0A0A0MRY4 1105 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 A0A1W2PQ67 120 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 AURKAO14965 403 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 MSI1O43347 362 aaKnown RBP11.8□□□□□ -0.52
HDAC4-210ENST00000493582 NRP2O60462 931 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 SRP72O76094 671 aaKnown RBP11.8□□□□□ -0.52
HDAC4-210ENST00000493582 CHEK2O96017 543 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 IL10P22301 178 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 MZF1P28698 734 aaPredicted RBP11.8□□□□□ -0.52
HDAC4-210ENST00000493582 PIGFQ07326 219 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 ZNF460Q14592 562 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 MAPRE1Q15691 268 aaKnown RBP11.8□□□□□ -0.52
HDAC4-210ENST00000493582 CCNYL2Q5T2Q4 361 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 OTUD5Q96G74 571 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 CENPNQ96H22 339 aaPredicted RBP11.8□□□□□ -0.52
HDAC4-210ENST00000493582 HEXIM2Q96MH2 286 aaKnown RBP11.8□□□□□ -0.52
HDAC4-210ENST00000493582 SPATA13Q96N96 652 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 DGCR6LQ9BY27 220 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 ELOVL4Q9GZR5 314 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 IL22Q9GZX6 179 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 ATP13A3Q9H7F0 1226 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 GGA3Q9NZ52 723 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.8□□□□□ -0.521e-6■■■■□ 24.6
HDAC4-210ENST00000493582 TLK1Q9UKI8 766 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 SARDHQ9UL12 918 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 TLL2Q9Y6L7 1015 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 ATP6AP2A0A1C7CYW4 349 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 UBDO15205 165 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 ATP6AP2O75787 350 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 CABYRO75952 493 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 DDHD2O94830 711 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 RASAL1O95294 804 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 CYP3A5P20815 502 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 C1QTNF8P60827 252 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 GRM3Q14832 879 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 CNSTQ6PJW8 725 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 ZNF773Q6PK81 442 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 CRTC3Q6UUV7 619 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 USP43Q70EL4 1123 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 ANKRD52Q8NB46 1076 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 PDPRQ8NCN5 879 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 VPS39Q96JC1 886 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 MAELQ96JY0 434 aaKnown RBP11.8□□□□□ -0.52
HDAC4-210ENST00000493582 QKIQ96PU8 341 aaKnown RBP eCLIP11.8□□□□□ -0.522e-6■■■■□ 21.5
HDAC4-210ENST00000493582 PDCD2LQ9BRP1 358 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 ADNPQ9H2P0 1102 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 SNX25Q9H3E2 840 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 TNFRSF12AQ9NP84 129 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 TBC1D13Q9NVG8 400 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.8□□□□□ -0.52
HDAC4-210ENST00000493582 ADAM28Q9UKQ2 775 aa11.8□□□□□ -0.52
HDAC4-210ENST00000493582 NEMP2A6NFY4 417 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 NME4O00746 187 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 PPEF1O14829 653 aaPredicted RBP11.79□□□□□ -0.52
HDAC4-210ENST00000493582 GPC4O75487 556 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 RPS9P46781 194 aaKnown RBP11.79□□□□□ -0.52
HDAC4-210ENST00000493582 HSDL1Q3SXM5 330 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 PRR23BQ6ZRT6 265 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 SLC22A16Q86VW1 577 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 CDR2LQ86X02 465 aaPredicted RBP11.79□□□□□ -0.52
HDAC4-210ENST00000493582 SCUBE3Q8IX30 993 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.79□□□□□ -0.52
HDAC4-210ENST00000493582 CNDP2Q96KP4 475 aaKnown RBP11.79□□□□□ -0.52
HDAC4-210ENST00000493582 ZNF670Q9BS34 389 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 FUNDC2Q9BWH2 189 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 FAM49BQ9NUQ9 324 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 MTRRQ9UBK8 725 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 PCDHGA3Q9Y5H0 932 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 RAD54BQ9Y620 910 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 C9JVG2 144 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 RNF103O00237 685 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 AXIN1O15169 862 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 MAFGO15525 162 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 GUCY1B2O75343 617 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 KRT75O95678 551 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 PIGRP01833 764 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 PTPN2P17706 415 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 NAT1P18440 290 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 PSMA4P25789 261 aaKnown RBP11.79□□□□□ -0.52
HDAC4-210ENST00000493582 NDUFA5Q16718 116 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 PAGE2BQ5JRK9 111 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 TBPL2Q6SJ96 375 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 SFRP1Q8N474 314 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 NAT9Q9BTE0 207 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 C1QTNF1Q9BXJ1 281 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 FTHL17Q9BXU8 183 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 DEFB129Q9H1M3 183 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 TP63Q9H3D4 680 aaPredicted RBP11.79□□□□□ -0.52
HDAC4-210ENST00000493582 CHRAC1Q9NRG0 131 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 IARS2Q9NSE4 1012 aaKnown RBP11.79□□□□□ -0.52
HDAC4-210ENST00000493582 XPR1Q9UBH6 696 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 QSER1Q2KHR3 1735 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 TRPC5OSA6NMA1 111 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 ALOX5P09917 674 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 MTHFD1P11586 935 aaKnown RBP11.79□□□□□ -0.52
HDAC4-210ENST00000493582 YWHAQP27348 245 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 AXLP30530 894 aa11.79□□□□□ -0.52
HDAC4-210ENST00000493582 CAP2P40123 477 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms