RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 MYF5P13349 255 aa19.03■□□□□ 0.64
CCDC88B-206ENST00000473405 HNRNPKP61978 463 aaKnown RBP eCLIP19.03■□□□□ 0.64
CCDC88B-206ENST00000473405 DAB2P98082 770 aa19.03■□□□□ 0.64
CCDC88B-206ENST00000473405 PDE1CQ14123 709 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-206ENST00000473405 CYP4V2Q6ZWL3 525 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-206ENST00000473405 CACTIN-AS1Q8N1I8 211 aa19.03■□□□□ 0.64
CCDC88B-206ENST00000473405 CENPTQ96BT3 561 aa19.03■□□□□ 0.64
CCDC88B-206ENST00000473405 APOLD1Q96LR9 279 aa19.03■□□□□ 0.64
CCDC88B-206ENST00000473405 TRIM7Q9C029 511 aa19.03■□□□□ 0.64
CCDC88B-206ENST00000473405 NAT10Q9H0A0 1025 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-206ENST00000473405 PNMA8BQ9ULN7 279 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-206ENST00000473405 AP4E1Q9UPM8 1137 aa19.03■□□□□ 0.64
CCDC88B-206ENST00000473405 K7ESM1 405 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 ITIH2P19823 946 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 TNFAIP3P21580 790 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 HTR7P34969 479 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 IGFALSP35858 605 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 TPI1P60174 286 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 RTP5Q14D33 572 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 CYTH1Q15438 398 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 CA9Q16790 459 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 TTC7BQ86TV6 843 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 PDZD3Q86UT5 571 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 FAM181AQ8N9Y4 354 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 NRSN2Q9GZP1 204 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 PARVAQ9NVD7 372 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 DKK3Q9UBP4 350 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 CLCA2Q9UQC9 943 aa19.02■□□□□ 0.64
CCDC88B-206ENST00000473405 J3KR12 359 aa19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 TLX3O43711 291 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 MMP20O60882 483 aa19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 PIGNO95427 931 aa19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 ALPPL2P10696 532 aa19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 TIMP2P16035 220 aa19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 PSMA2P25787 234 aa19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 RAD51Q06609 339 aa19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 EIF2B5Q13144 721 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 ASIC2Q16515 512 aa19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 HS1BP3Q53T59 392 aa19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 PPP1R2P3Q6NXS1 205 aa19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 ZNF571Q7Z3V5 609 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 VPS36Q86VN1 386 aa19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 CELF6Q96J87 481 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 SNRNP25Q9BV90 132 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 CPEB1Q9BZB8 566 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 HAUS4Q9H6D7 363 aa19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 UBA2Q9UBT2 640 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-206ENST00000473405 RP1P56715 2156 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 A0A1B0GTH6 734 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 A0A1W2PQC6 194 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 TSPAN11A1L157 253 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 NEMP2A6NFY4 417 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 TMEM191CA6NGB0 347 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 H3BM21 787 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 AQP9O43315 295 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 PRAMEF11O60813 436 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 DESP17661 470 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 PRKCIP41743 596 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 NDST2P52849 883 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 E2F1Q01094 437 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 SEMG2Q02383 582 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 RBFAQ8N0V3 343 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 TP53I13Q8NBR0 393 aaPredicted RBP19■□□□□ 0.63
CCDC88B-206ENST00000473405 CRELD1Q96HD1 420 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 NAP1L5Q96NT1 182 aaPredicted RBP19■□□□□ 0.63
CCDC88B-206ENST00000473405 KCTD15Q96SI1 283 aaPredicted RBP19■□□□□ 0.63
CCDC88B-206ENST00000473405 WRAP53Q9BUR4 548 aaKnown RBP19■□□□□ 0.63
CCDC88B-206ENST00000473405 DUSP23Q9BVJ7 150 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 DHX35Q9H5Z1 703 aaKnown RBP19■□□□□ 0.63
CCDC88B-206ENST00000473405 MBNL1Q9NR56 388 aaKnown RBP19■□□□□ 0.63
CCDC88B-206ENST00000473405 AIPL1Q9NZN9 384 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 CSNK1G3Q9Y6M4 447 aa19■□□□□ 0.63
CCDC88B-206ENST00000473405 EIF3CLB5ME19 914 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 EEF2KO00418 725 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 DDX3XO00571 662 aaKnown RBP eCLIP18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 OPA1O60313 960 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 MT-CO3P00414 261 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 GP1BAP07359 652 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 JUNDP17535 347 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 KLHL40Q2TBA0 621 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 CDCP2Q5VXM1 449 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 AFMIDQ63HM1 303 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 ZCCHC8Q6NZY4 707 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 ARHGAP12Q8IWW6 846 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 NPWQ8N729 165 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 CXorf40AQ8TE69 158 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 FNIP1Q8TF40 1166 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 EIF3CQ99613 913 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 SLC39A8Q9C0K1 460 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 TCEAL2Q9H3H9 227 aaPredicted RBP18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 USP29Q9HBJ7 922 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 PCSK1NQ9UHG2 260 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 IPO11Q9UI26 975 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 PCDHB1Q9Y5F3 818 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 AK5Q9Y6K8 562 aa18.99■□□□□ 0.63
CCDC88B-206ENST00000473405 HELZ2Q9BYK8 2649 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 SMTNL1A8MU46 457 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 BUB1BO60566 1050 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 TM7SF2O76062 418 aa18.98■□□□□ 0.63
CCDC88B-206ENST00000473405 FTLP02792 175 aaPredicted RBP18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms