RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 TBC1D25Q3MII6 688 aa17.71■□□□□ 0.43
COL7A1-208ENST00000470076 TPRG1LQ5T0D9 272 aa17.71■□□□□ 0.43
COL7A1-208ENST00000470076 UMODL1-AS1Q8N2C9 162 aa17.71■□□□□ 0.43
COL7A1-208ENST00000470076 MCEEQ96PE7 176 aa17.71■□□□□ 0.43
COL7A1-208ENST00000470076 BBC3Q96PG8 261 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-208ENST00000470076 DONSONQ9NYP3 566 aa17.71■□□□□ 0.43
COL7A1-208ENST00000470076 KLF15Q9UIH9 416 aa17.71■□□□□ 0.43
COL7A1-208ENST00000470076 SALL4Q9UJQ4 1053 aa17.71■□□□□ 0.43
COL7A1-208ENST00000470076 FZD10Q9ULW2 581 aa17.71■□□□□ 0.43
COL7A1-208ENST00000470076 PCDHB1Q9Y5F3 818 aa17.71■□□□□ 0.43
COL7A1-208ENST00000470076 EIF4E1BA6NMX2 242 aaKnown RBP17.7■□□□□ 0.42
COL7A1-208ENST00000470076 RASA4BC9J798 803 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 FGF10O15520 208 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-208ENST00000470076 RASA4O43374 803 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 MYF5P13349 255 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 FERP16591 822 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 HTR7P34969 479 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 RPL7AP62424 266 aaKnown RBP17.7■□□□□ 0.42
COL7A1-208ENST00000470076 EIF2B5Q13144 721 aaKnown RBP17.7■□□□□ 0.42
COL7A1-208ENST00000470076 SERINC3Q13530 473 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 PPP1R15BQ5SWA1 713 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 DCUN1D2Q6PH85 259 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 VPS36Q86VN1 386 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 LSMEM2Q8N112 164 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 IFI44Q8TCB0 444 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 MAPK15Q8TD08 544 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 LMX1AQ8TE12 382 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 CXorf40AQ8TE69 158 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 HMCESQ96FZ2 354 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 TBATAQ96M53 351 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 GBP4Q96PP9 640 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 UBL7Q96S82 380 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-208ENST00000470076 IL12RB2Q99665 862 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 CPEB1Q9BZB8 566 aaKnown RBP17.7■□□□□ 0.42
COL7A1-208ENST00000470076 KLC2Q9H0B6 622 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 PRORYQ9H606 182 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 SPASTQ9UBP0 616 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 KALRNO60229 2985 aa17.7■□□□□ 0.42
COL7A1-208ENST00000470076 GCN1Q92616 2671 aaKnown RBP17.69■□□□□ 0.42
COL7A1-208ENST00000470076 LZTS3O60299 673 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-208ENST00000470076 MMP20O60882 483 aa17.69■□□□□ 0.42
COL7A1-208ENST00000470076 CSO75390 466 aaKnown RBP17.69■□□□□ 0.42
COL7A1-208ENST00000470076 IGFALSP35858 605 aa17.69■□□□□ 0.42
COL7A1-208ENST00000470076 ELP6Q0PNE2 266 aa17.69■□□□□ 0.42
COL7A1-208ENST00000470076 GRM3Q14832 879 aa17.69■□□□□ 0.42
COL7A1-208ENST00000470076 LRRC73Q5JTD7 316 aa17.69■□□□□ 0.42
COL7A1-208ENST00000470076 ACAD10Q6JQN1 1059 aa17.69■□□□□ 0.42
COL7A1-208ENST00000470076 PPP1R2P3Q6NXS1 205 aa17.69■□□□□ 0.42
COL7A1-208ENST00000470076 MCOLN2Q8IZK6 566 aa17.69■□□□□ 0.42
COL7A1-208ENST00000470076 HCAR2Q8TDS4 363 aa17.69■□□□□ 0.42
COL7A1-208ENST00000470076 ZNF578Q96N58 590 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-208ENST00000470076 APOBEC3BQ9UH17 382 aaKnown RBP17.69■□□□□ 0.42
COL7A1-208ENST00000470076 EME2A4GXA9 379 aaPredicted RBP17.68■□□□□ 0.42
COL7A1-208ENST00000470076 USP12O75317 370 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 DXOO77932 396 aaKnown RBP17.68■□□□□ 0.42
COL7A1-208ENST00000470076 TIMP2P16035 220 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 XPAP23025 273 aaPredicted RBP17.68■□□□□ 0.42
COL7A1-208ENST00000470076 ANP32AP39687 249 aaKnown RBP17.68■□□□□ 0.42
COL7A1-208ENST00000470076 RP1P56715 2156 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 CDKN3Q16667 212 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 KLHL40Q2TBA0 621 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 DEFB133Q30KQ1 61 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 MACC1Q6ZN28 852 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 APTXQ7Z2E3 356 aaKnown RBP17.68■□□□□ 0.42
COL7A1-208ENST00000470076 DNAAF5Q86Y56 855 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 PHACTR4Q8IZ21 702 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 TP53I13Q8NBR0 393 aaPredicted RBP17.68■□□□□ 0.42
COL7A1-208ENST00000470076 TPCN2Q8NHX9 752 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 GLMNQ92990 594 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 VCPIP1Q96JH7 1222 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 NCAPGQ9BPX3 1015 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 SLC13A1Q9BZW2 595 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 LHX3Q9UBR4 397 aa17.68■□□□□ 0.42
COL7A1-208ENST00000470076 UBA2Q9UBT2 640 aaPredicted RBP17.68■□□□□ 0.42
COL7A1-208ENST00000470076 CPED1A4D0V7 1026 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 EIF3CLB5ME19 914 aaKnown RBP17.67■□□□□ 0.42
COL7A1-208ENST00000470076 LMO7DNF2Z398 122 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 MPOP05164 745 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 EIF4A3P38919 411 aaKnown RBP17.67■□□□□ 0.42
COL7A1-208ENST00000470076 LSSP48449 732 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 RPIAP49247 311 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 NDST2P52849 883 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 PCBP4P57723 403 aaKnown RBP17.67■□□□□ 0.42
COL7A1-208ENST00000470076 TPI1P60174 286 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 GABREP78334 506 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 CCDC173Q0VFZ6 552 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 NCAPHQ15003 741 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 CYTH1Q15438 398 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 NR0B2Q15466 257 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 TMEM52BQ4KMG9 183 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 PRRT3Q5FWE3 981 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 GUSBP11Q6P575 273 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 EFL1Q7Z2Z2 1120 aaKnown RBP17.67■□□□□ 0.42
COL7A1-208ENST00000470076 RBFAQ8N0V3 343 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 NETO2Q8NC67 525 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 ZNF248Q8NDW4 579 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 GRAMD1AQ96CP6 724 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 EXOC2Q96KP1 924 aa17.67■□□□□ 0.42
COL7A1-208ENST00000470076 FCRL3Q96P31 734 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-208ENST00000470076 EIF3CQ99613 913 aaKnown RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms