RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 WDR19Q8NEZ3 1342 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 RNF103-CHMP3A0A140T963 221 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 AQP12BA6NM10 295 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 F8W8V4 182 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 H0YIV9 168 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 MYO1FO00160 1098 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 RNF103O00237 685 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 VWA5AO00534 786 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 EBAG9O00559 213 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 POLR2DO15514 142 aaKnown RBP5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 LARGE1O95461 756 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 POLR2MP0CAP2 368 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 ACTN1P12814 892 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 LAMP2P13473 410 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 CDH3P22223 829 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 MCM5P33992 734 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 GP5P40197 560 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 IL15P40933 162 aaPredicted RBP5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 TPTEP56180 551 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 SOX8P57073 446 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 GMFBP60983 142 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 PRKCZQ05513 592 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 GRSF1Q12849 480 aaKnown RBP eCLIP5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 MAMLD1Q13495 774 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 TCTE1Q5JU00 501 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 CYP4A22Q5TCH4 519 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 SULT6B1Q6IMI4 303 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 NFRKBQ6P4R8 1299 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 B3GNT6Q6ZMB0 384 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 BBS12Q6ZW61 710 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 RABEPKQ7Z6M1 372 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 PXKQ7Z7A4 578 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 ADCK1Q86TW2 530 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 FAM160B2Q86V87 743 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 KIAA2013Q8IYS2 634 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 CELF5Q8N6W0 485 aaKnown RBP5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 GBP7Q8N8V2 638 aaPredicted RBP5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 FAM184AQ8NB25 1140 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 FIBINQ8TAL6 211 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 FAM71BQ8TC56 605 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 ZNF653Q96CK0 615 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 DAZAP1Q96EP5 407 aaKnown RBP5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 PDLIM5Q96HC4 596 aaKnown RBP5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 CNOT6LQ96LI5 555 aaKnown RBP5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 GAL3ST1Q99999 423 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 THUMPD3Q9BV44 507 aaKnown RBP5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 INTS2Q9H0H0 1204 aaKnown RBP5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 SAYSD1Q9NPB0 183 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 SNX15Q9NRS6 342 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 KLHL13Q9P2N7 655 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 CCPG1Q9ULG6 757 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 NDRG4Q9ULP0 352 aaKnown RBP5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 SH2B3Q9UQQ2 575 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 WDR37Q9Y2I8 494 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 MRPS17Q9Y2R5 130 aaKnown RBP5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 CCL27Q9Y4X3 112 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 CYP46A1Q9Y6A2 500 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 KDRP35968 1356 aa5.01□□□□□ -1.61
CCDC88A-210ENST00000468534 TTC41PQ6P2S7 1318 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 ZNF335Q9H4Z2 1342 aaPredicted RBP5□□□□□ -1.61
CCDC88A-210ENST00000468534 H3BNC9 293 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 VILLO15195 856 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 ADAM20O43506 726 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 SLC25A17O43808 307 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 BCAS2O75934 225 aaPredicted RBP5□□□□□ -1.61
CCDC88A-210ENST00000468534 LETM1O95202 739 aaPredicted RBP5□□□□□ -1.61
CCDC88A-210ENST00000468534 GRPP07492 148 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 DLATP10515 647 aaKnown RBP5□□□□□ -1.61
CCDC88A-210ENST00000468534 PPIFP30405 207 aaKnown RBP5□□□□□ -1.61
CCDC88A-210ENST00000468534 ARL3P36405 182 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 PLCD1P51178 756 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 HADHBP55084 474 aaKnown RBP5□□□□□ -1.61
CCDC88A-210ENST00000468534 NUCB2P80303 420 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 ARHGAP8P85298 464 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 KRT17Q04695 432 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 RALGDSQ12967 914 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 BNIP1Q12981 228 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 RPA4Q13156 261 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 SLC12A1Q13621 1099 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 E2F2Q14209 437 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 MAPKAPK3Q16644 382 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 SMU1Q2TAY7 513 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 ZNF260Q3ZCT1 412 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 AARDQ4LEZ3 155 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 HSP90AA5PQ58FG0 334 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 BMP2KLQ5H9B9 411 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 DEPDC1Q5TB30 811 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 FCRL6Q6DN72 434 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 KLC3Q6P597 504 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 Q6ZWC4 215 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 MON1AQ86VX9 555 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 METTL23Q86XA0 190 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 P3H2Q8IVL5 708 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 CDH26Q8IXH8 852 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 TAGAPQ8N103 731 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 ADSSL1Q8N142 457 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 TXLNBQ8N3L3 684 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 GALNT16Q8N428 558 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 ARL14Q8N4G2 192 aa5□□□□□ -1.61
CCDC88A-210ENST00000468534 C8orf58Q8NAV2 365 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms