RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 TRPC4APQ8TEL6 797 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 IRGQQ8WZA9 623 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 JSRP1Q96MG2 331 aaPredicted RBP12.19□□□□□ -0.46
NEK1-201ENST00000439128 RNF157Q96PX1 679 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 LGMNQ99538 433 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 NDNQ99608 321 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 CDC42EP4Q9H3Q1 356 aaKnown RBP12.19□□□□□ -0.46
NEK1-201ENST00000439128 DZANK1Q9NVP4 752 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 RAI2Q9Y5P3 530 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 DNALI1O14645 258 aaPredicted RBP12.19□□□□□ -0.46
NEK1-201ENST00000439128 FFAR2O15552 330 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 DNAJC3Q13217 504 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 CRYMQ14894 314 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 PFKFB4Q16877 469 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 WDR45BQ5MNZ6 344 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 RBFAQ8N0V3 343 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 TEX9Q8N6V9 391 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 ZFP28Q8NHY6 868 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 SPPL2AQ8TCT8 520 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 ZNF398Q8TD17 642 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 KLHL32Q96NJ5 620 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 L1RE1Q9UN81 338 aa12.19□□□□□ -0.46
NEK1-201ENST00000439128 SLC25A12O75746 678 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 HLA-DQA2P01906 255 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 DDX6P26196 483 aaKnown RBP eCLIP12.18□□□□□ -0.46
NEK1-201ENST00000439128 CTSOP43234 321 aaPredicted RBP12.18□□□□□ -0.46
NEK1-201ENST00000439128 MASP1P48740 699 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 MRPS15P82914 257 aaKnown RBP12.18□□□□□ -0.46
NEK1-201ENST00000439128 E2F4Q16254 413 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 LRRC36Q1X8D7 754 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 FAM129CQ86XR2 697 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 RASGRP3Q8IV61 690 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 TMEM192Q8IY95 271 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 KATNAL2Q8IYT4 538 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 C1orf127Q8N9H9 656 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 ACTRT1Q8TDG2 376 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 SHC3Q92529 594 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 AGO3Q9H9G7 860 aaKnown RBP12.18□□□□□ -0.46
NEK1-201ENST00000439128 IFT172Q9UG01 1749 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 RRP15Q9Y3B9 282 aaKnown RBP12.18□□□□□ -0.46
NEK1-201ENST00000439128 ROBO3Q96MS0 1386 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 B4DGG1 531 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 UBDO15205 165 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 KLHL41O60662 606 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 TM7SF2O76062 418 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 FGF1P05230 155 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 FGRP09769 529 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 EPORP19235 508 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 ALDH4A1P30038 563 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 CATSPER1Q8NEC5 780 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 DQX1Q8TE96 717 aaKnown RBP12.18□□□□□ -0.46
NEK1-201ENST00000439128 TPD52L3Q96J77 140 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 STXBP5LQ9Y2K9 1186 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 MDH1P40925 334 aaKnown RBP12.18□□□□□ -0.46
NEK1-201ENST00000439128 IL17AQ16552 155 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 DNAJC14Q6Y2X3 702 aaPredicted RBP12.18□□□□□ -0.46
NEK1-201ENST00000439128 CLEC17AQ6ZS10 378 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 SLC9A9Q8IVB4 645 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 PRSS58Q8IYP2 241 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 OR7D4Q8NG98 312 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 STAG3L4Q8TBR4 150 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 SUCOQ9UBS9 1254 aaKnown RBP12.18□□□□□ -0.46
NEK1-201ENST00000439128 PSMD13Q9UNM6 376 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 KLHL20Q9Y2M5 609 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 CILPO75339 1184 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 PABPC1P11940 636 aaKnown RBP12.18□□□□□ -0.46
NEK1-201ENST00000439128 GNPDA1P46926 289 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 PLOD1Q02809 727 aaPredicted RBP12.18□□□□□ -0.46
NEK1-201ENST00000439128 LONP2Q86WA8 852 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 ADGRG2Q8IZP9 1017 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 OR4L1Q8NH43 312 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 ERP27Q96DN0 273 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 TRIM4Q9C037 500 aa12.18□□□□□ -0.46
NEK1-201ENST00000439128 SLCO1B7G3V0H7 640 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 FFAR3O14843 346 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 GPR42O15529 346 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 ASLP04424 464 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 SLC11A1P49279 550 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 AIF1P55008 147 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 CSTF3Q12996 717 aaKnown RBP12.17□□□□□ -0.46
NEK1-201ENST00000439128 ENPP7Q6UWV6 458 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 GALNT4Q8N4A0 578 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 STARD8Q92502 1023 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 MRPL48Q96GC5 212 aaKnown RBP12.17□□□□□ -0.46
NEK1-201ENST00000439128 ZNF670Q9BS34 389 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.17□□□□□ -0.46
NEK1-201ENST00000439128 ZNF780BQ9Y6R6 833 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 A0A1W2PQ67 120 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 WDR47O94967 919 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 WARSP23381 471 aaKnown RBP12.17□□□□□ -0.46
NEK1-201ENST00000439128 PSMA4P25789 261 aaKnown RBP12.17□□□□□ -0.46
NEK1-201ENST00000439128 CHRNB3Q05901 458 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 STX4Q12846 297 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 CCDC153Q494R4 210 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 MMAAQ8IVH4 418 aaKnown RBP12.17□□□□□ -0.46
NEK1-201ENST00000439128 FAM71AQ8IYT1 594 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 DTX3LQ8TDB6 740 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 LCN9Q8WX39 176 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 POLR1BQ9H9Y6 1135 aa12.17□□□□□ -0.46
NEK1-201ENST00000439128 SCN3BQ9NY72 215 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms