RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 MYLK3Q32MK0 819 aa23.24■■□□□ 1.31
CPSF4-204ENST00000436336 SPDYCQ5MJ68 293 aa23.24■■□□□ 1.31
CPSF4-204ENST00000436336 DENND5AQ6IQ26 1287 aa23.24■■□□□ 1.31
CPSF4-204ENST00000436336 TRMT10CQ7L0Y3 403 aaKnown RBP23.24■■□□□ 1.31
CPSF4-204ENST00000436336 KDELC2Q7Z4H8 507 aa23.24■■□□□ 1.31
CPSF4-204ENST00000436336 OR2A12Q8NGT7 310 aa23.24■■□□□ 1.31
CPSF4-204ENST00000436336 OR6K2Q8NGY2 324 aa23.24■■□□□ 1.31
CPSF4-204ENST00000436336 SIGLEC10Q96LC7 697 aa23.24■■□□□ 1.31
CPSF4-204ENST00000436336 TUBGCP5Q96RT8 1024 aa23.24■■□□□ 1.31
CPSF4-204ENST00000436336 CPEB1Q9BZB8 566 aaKnown RBP23.24■■□□□ 1.31
CPSF4-204ENST00000436336 CDC42EP4Q9H3Q1 356 aaKnown RBP23.24■■□□□ 1.31
CPSF4-204ENST00000436336 PIH1D1Q9NWS0 290 aaKnown RBP23.24■■□□□ 1.31
CPSF4-204ENST00000436336 BFARQ9NZS9 450 aa23.24■■□□□ 1.31
CPSF4-204ENST00000436336 PCDHGC4Q9Y5F7 938 aa23.24■■□□□ 1.31
CPSF4-204ENST00000436336 TEX264Q9Y6I9 313 aa23.24■■□□□ 1.31
CPSF4-204ENST00000436336 UNC80Q8N2C7 3258 aa23.24■■□□□ 1.31
CPSF4-204ENST00000436336 WASH3PC4AMC7 463 aa23.23■■□□□ 1.31
CPSF4-204ENST00000436336 BNIP3LO60238 219 aa23.23■■□□□ 1.31
CPSF4-204ENST00000436336 BANF1O75531 89 aa23.23■■□□□ 1.31
CPSF4-204ENST00000436336 POP4O95707 220 aaKnown RBP23.23■■□□□ 1.31
CPSF4-204ENST00000436336 SESN2P58004 480 aaPredicted RBP23.23■■□□□ 1.31
CPSF4-204ENST00000436336 BCL2L1Q07817 233 aa23.23■■□□□ 1.31
CPSF4-204ENST00000436336 TRAF2Q12933 501 aa23.23■■□□□ 1.31
CPSF4-204ENST00000436336 SLC1A5Q15758 541 aa23.23■■□□□ 1.31
CPSF4-204ENST00000436336 DPY19L3Q6ZPD9 716 aa23.23■■□□□ 1.31
CPSF4-204ENST00000436336 TRIB3Q96RU7 358 aa23.23■■□□□ 1.31
CPSF4-204ENST00000436336 ATP13A3Q9H7F0 1226 aa23.23■■□□□ 1.31
CPSF4-204ENST00000436336 DUSP12Q9UNI6 340 aa23.23■■□□□ 1.31
CPSF4-204ENST00000436336 SDR42E2A6NKP2 422 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 NPC1O15118 1278 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 SOCS5O75159 536 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 NDST3O95803 873 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 ATXN1LP0C7T5 689 aaKnown RBP23.22■■□□□ 1.31
CPSF4-204ENST00000436336 HNRNPLP14866 589 aaKnown RBP eCLIP23.22■■□□□ 1.31
CPSF4-204ENST00000436336 FASTKD3Q14CZ7 662 aaKnown RBP23.22■■□□□ 1.31
CPSF4-204ENST00000436336 CCDC38Q502W7 563 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 AGGF1Q8N302 714 aaeCLIP23.22■■□□□ 1.31
CPSF4-204ENST00000436336 FBXO36Q8NEA4 188 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 PYROXD1Q8WU10 500 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 PTPRN2Q92932 1015 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 C9orf72Q96LT7 481 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 TMEM245Q9H330 911 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 SEMA4AQ9H3S1 761 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 HCN2Q9UL51 889 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 K7EQS6 105 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 FGF1P05230 155 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 DRD1P21728 446 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 MGAT1P26572 445 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 SERPINA4P29622 427 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 ELK3P41970 407 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 CHRNA4P43681 627 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 PON2Q15165 354 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 HNRNPA1L2Q32P51 320 aaKnown RBP23.22■■□□□ 1.31
CPSF4-204ENST00000436336 TMEM196Q5HYL7 178 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 SIRPB2Q5JXA9 342 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 HP1BP3Q5SSJ5 553 aaPredicted RBP23.22■■□□□ 1.31
CPSF4-204ENST00000436336 SERPINA13PQ6UXR4 307 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 ANKMY2Q8IV38 441 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 SLC25A41Q8N5S1 370 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 TTC25Q96NG3 672 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 IL22Q9GZX6 179 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 NINJ2Q9NZG7 142 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 CHKBQ9Y259 395 aa23.22■■□□□ 1.31
CPSF4-204ENST00000436336 CKAP5Q14008 2032 aa23.21■■□□□ 1.31
CPSF4-204ENST00000436336 EDDM13A0A1B0GTR0 161 aa23.21■■□□□ 1.31
CPSF4-204ENST00000436336 FZD6O60353 706 aa23.21■■□□□ 1.31
CPSF4-204ENST00000436336 SLC44A4Q53GD3 710 aa23.21■■□□□ 1.31
CPSF4-204ENST00000436336 EGFLAMQ63HQ2 1017 aa23.21■■□□□ 1.31
CPSF4-204ENST00000436336 CAMK1DQ8IU85 385 aa23.21■■□□□ 1.31
CPSF4-204ENST00000436336 UBLCP1Q8WVY7 318 aaPredicted RBP23.21■■□□□ 1.31
CPSF4-204ENST00000436336 EZH1Q92800 747 aaPredicted RBP23.21■■□□□ 1.31
CPSF4-204ENST00000436336 HEPHQ9BQS7 1158 aa23.21■■□□□ 1.31
CPSF4-204ENST00000436336 WDR83Q9BRX9 315 aaKnown RBP23.21■■□□□ 1.31
CPSF4-204ENST00000436336 ADGRE3Q9BY15 652 aa23.21■■□□□ 1.31
CPSF4-204ENST00000436336 PABPC3Q9H361 631 aaKnown RBP23.21■■□□□ 1.31
CPSF4-204ENST00000436336 ZDHHC6Q9H6R6 413 aa23.21■■□□□ 1.31
CPSF4-204ENST00000436336 CHMP2BQ9UQN3 213 aa23.21■■□□□ 1.31
CPSF4-204ENST00000436336 TRAFD1O14545 582 aaPredicted RBP23.2■■□□□ 1.3
CPSF4-204ENST00000436336 HTRA2O43464 458 aaPredicted RBP23.2■■□□□ 1.3
CPSF4-204ENST00000436336 PIGNO95427 931 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 TTC4O95801 387 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 CPP00450 1065 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 PRLP01236 227 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 GKP32189 559 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 HSD17B3P37058 310 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 IL12RB1P42701 662 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 GRSF1Q12849 480 aaKnown RBP eCLIP23.2■■□□□ 1.3
CPSF4-204ENST00000436336 KYNUQ16719 465 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 IER5LQ5T953 404 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 FSTL4Q6MZW2 842 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 MPP5Q8N3R9 675 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 ZNF366Q8N895 744 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 ZNF513Q8N8E2 541 aaPredicted RBP23.2■■□□□ 1.3
CPSF4-204ENST00000436336 CHST14Q8NCH0 376 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 VOPP1Q96AW1 172 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 EBNA1BP2Q99848 306 aaKnown RBP23.2■■□□□ 1.3
CPSF4-204ENST00000436336 SYBUQ9NX95 663 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 SUN2Q9UH99 717 aa23.2■■□□□ 1.3
CPSF4-204ENST00000436336 PDHA1P08559 390 aa23.19■■□□□ 1.3
CPSF4-204ENST00000436336 ALADP13716 330 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms