RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 RETSATQ6NUM9 610 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 CUZD1Q86UP6 607 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 LURAP1LQ8IV03 231 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 RAB40AQ8WXH6 277 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 TBC1D20Q96BZ9 403 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 ARPC5LQ9BPX5 153 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 MROH8Q9H579 483 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 ZNF556Q9HAH1 456 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 OR6C3Q9NZP0 311 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 IGLV5-37A0A075B6J1 123 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 A0A0U1RQJ8 604 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 ARHGAP10A1A4S6 786 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 SH2D7A6NKC9 451 aaPredicted RBP3.49□□□□□ -1.85
CLK1-204ENST00000432425 EBAG9O00559 213 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 TIMM23O14925 209 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 KRT86O43790 486 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 CEP104O60308 925 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 ATP2C2O75185 946 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 ZNF432O94892 652 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 FMO4P31512 558 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 TTKP33981 857 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 TBL3Q12788 808 aaKnown RBP3.49□□□□□ -1.85
CLK1-204ENST00000432425 GRSF1Q12849 480 aaKnown RBP eCLIP3.49□□□□□ -1.85
CLK1-204ENST00000432425 MYBPHQ13203 477 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 SNTA1Q13424 505 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 SLC12A1Q13621 1099 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 RUNX2Q13950 521 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 KRT81Q14533 505 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 NAA25Q14CX7 972 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 XKR9Q5GH70 373 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 C9orf50Q5SZB4 431 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.49□□□□□ -1.85
CLK1-204ENST00000432425 HERC6Q8IVU3 1022 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 SFTPA2Q8IWL1 248 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 SUGP1Q8IWZ8 645 aaKnown RBP3.49□□□□□ -1.85
CLK1-204ENST00000432425 CPXM2Q8N436 756 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 NKAPQ8N5F7 415 aaKnown RBP3.49□□□□□ -1.85
CLK1-204ENST00000432425 AADATQ8N5Z0 425 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 LILRB1Q8NHL6 650 aaPredicted RBP3.49□□□□□ -1.85
CLK1-204ENST00000432425 DNASE2BQ8WZ79 361 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 STAMQ92783 540 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 MTBPQ96DY7 904 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 PYM1Q9BRP8 204 aaKnown RBP3.49□□□□□ -1.85
CLK1-204ENST00000432425 MMTAG2Q9BU76 263 aaKnown RBP3.49□□□□□ -1.85
CLK1-204ENST00000432425 LMAN2LQ9H0V9 348 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 IL25Q9H293 177 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 DDX31Q9H8H2 851 aaKnown RBP3.49□□□□□ -1.85
CLK1-204ENST00000432425 PTPRHQ9HD43 1115 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 ITM2CQ9NQX7 267 aa3.49□□□□□ -1.85
CLK1-204ENST00000432425 C17orf113A0A1B0GUU1 675 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 SRRM3A6NNA2 597 aaPredicted RBP3.48□□□□□ -1.85
CLK1-204ENST00000432425 PER2O15055 1255 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 CAMTA2O94983 1202 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 VNN2O95498 520 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 SNRNP70P08621 437 aaKnown RBP3.48□□□□□ -1.85
CLK1-204ENST00000432425 ZNF8P17098 575 aaPredicted RBP3.48□□□□□ -1.85
CLK1-204ENST00000432425 BLKP51451 505 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 YWHAZP63104 245 aaKnown RBP3.48□□□□□ -1.85
CLK1-204ENST00000432425 EFR3AQ14156 821 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 SF3B4Q15427 424 aaKnown RBP eCLIP3.48□□□□□ -1.858e-9■■■■■ 52
CLK1-204ENST00000432425 FBXO47Q5MNV8 452 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 CERS3Q8IU89 383 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 SLITRK1Q96PX8 696 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 TWNKQ96RR1 684 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 POLR3GLQ9BT43 218 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.48□□□□□ -1.85
CLK1-204ENST00000432425 SLC32A1Q9H598 525 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 EPHX3Q9H6B9 360 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 MALT1Q9UDY8 824 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 NDRG3Q9UGV2 375 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 PCDHGB5Q9Y5G0 923 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 NFS1Q9Y697 457 aa3.48□□□□□ -1.85
CLK1-204ENST00000432425 IGKV3-20P01619 116 aa3.47□□□□□ -1.85
CLK1-204ENST00000432425 PCNAP12004 261 aa3.47□□□□□ -1.85
CLK1-204ENST00000432425 DDR1Q08345 913 aa3.47□□□□□ -1.85
CLK1-204ENST00000432425 ARHGEF6Q15052 776 aa3.47□□□□□ -1.85
CLK1-204ENST00000432425 ZNF628Q5EBL2 1059 aa3.47□□□□□ -1.85
CLK1-204ENST00000432425 WBP2NLQ6ICG8 309 aa3.47□□□□□ -1.85
CLK1-204ENST00000432425 RFWD2Q8NHY2 731 aa3.47□□□□□ -1.85
CLK1-204ENST00000432425 ARRDC2Q8TBH0 407 aa3.47□□□□□ -1.85
CLK1-204ENST00000432425 NOC3LQ8WTT2 800 aaKnown RBP3.47□□□□□ -1.85
CLK1-204ENST00000432425 LRFN5Q96NI6 719 aa3.47□□□□□ -1.85
CLK1-204ENST00000432425 OR1F2PQ96R84 312 aa3.47□□□□□ -1.85
CLK1-204ENST00000432425 TAOK3Q9H2K8 898 aa3.47□□□□□ -1.85
CLK1-204ENST00000432425 KCNG2Q9UJ96 466 aa3.47□□□□□ -1.85
CLK1-204ENST00000432425 SAA2-SAA4A0A096LPE2 208 aa3.46□□□□□ -1.85
CLK1-204ENST00000432425 FAM90A7PA6NKC0 464 aa3.46□□□□□ -1.85
CLK1-204ENST00000432425 FAM90A22PA8MWA6 464 aa3.46□□□□□ -1.85
CLK1-204ENST00000432425 FAM90A12PA8MX19 464 aa3.46□□□□□ -1.85
CLK1-204ENST00000432425 FAM90A23PA8MXZ1 464 aa3.46□□□□□ -1.85
CLK1-204ENST00000432425 MTA2O94776 668 aa3.46□□□□□ -1.85
CLK1-204ENST00000432425 RGS11O94810 467 aa3.46□□□□□ -1.85
CLK1-204ENST00000432425 POU5F1BQ06416 359 aa3.46□□□□□ -1.85
CLK1-204ENST00000432425 DHX34Q14147 1143 aaKnown RBP3.46□□□□□ -1.85
CLK1-204ENST00000432425 CALCRLQ16602 461 aa3.46□□□□□ -1.85
CLK1-204ENST00000432425 ZNF718Q3SXZ3 478 aa3.46□□□□□ -1.85
CLK1-204ENST00000432425 ZNF672Q499Z4 452 aaPredicted RBP3.46□□□□□ -1.85
CLK1-204ENST00000432425 RHBDF2Q6PJF5 856 aa3.46□□□□□ -1.85
CLK1-204ENST00000432425 TMED8Q6PL24 325 aaPredicted RBP3.46□□□□□ -1.85
CLK1-204ENST00000432425 CCDC129Q6ZRS4 1044 aa3.46□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms