RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 POM121L1PQ3SYA9 428 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 PLK5Q496M5 336 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 ZNF805Q5CZA5 627 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 GDPD4Q6W3E5 623 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 PARS2Q7L3T8 475 aaKnown RBP12.56□□□□□ -0.4
USP40-205ENST00000430158 PRPF39Q86UA1 669 aaKnown RBP12.56□□□□□ -0.4
USP40-205ENST00000430158 KBTBD6Q86V97 674 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 CAMK1DQ8IU85 385 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 HDDC3Q8N4P3 179 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 TTC13Q8NBP0 860 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 HCAR2Q8TDS4 363 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 HTR3CQ8WXA8 447 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 ATG4AQ8WYN0 398 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 NKD2Q969F2 451 aaPredicted RBP12.56□□□□□ -0.4
USP40-205ENST00000430158 TOE1Q96GM8 510 aaKnown RBP12.56□□□□□ -0.4
USP40-205ENST00000430158 ZNF641Q96N77 438 aaPredicted RBP12.56□□□□□ -0.4
USP40-205ENST00000430158 TUBGCP5Q96RT8 1024 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 OSBPL9Q96SU4 736 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 SEMA3CQ99985 751 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 IRF2BPLQ9H1B7 796 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 ZDHHC6Q9H6R6 413 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 FAM86C1Q9NVL1 165 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 DNPEPQ9ULA0 475 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 ZKSCAN5Q9Y2L8 839 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 HCN4Q9Y3Q4 1203 aa12.56□□□□□ -0.4
USP40-205ENST00000430158 C16orf96A6NNT2 1141 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 C1QTNF3-AMACRE9PGA6 284 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 KPNA3O00505 521 aaPredicted RBP12.55□□□□□ -0.4
USP40-205ENST00000430158 AREL1O15033 823 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 ZBTB24O43167 697 aaPredicted RBP12.55□□□□□ -0.4
USP40-205ENST00000430158 SLC7A4O43246 635 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 MTSS1O43312 755 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 LIASO43766 372 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 CEP104O60308 925 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 FZD6O60353 706 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 PRLP01236 227 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 FGGP02679 453 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 CES1P23141 567 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 OXTRP30559 389 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 ABL2P42684 1182 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 MAPK8P45983 427 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 ADPRHP54922 357 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 ETF1P62495 437 aaKnown RBP12.55□□□□□ -0.4
USP40-205ENST00000430158 SKOR1P84550 965 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 NHLH1Q02575 133 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 TRAF2Q12933 501 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 BYSLQ13895 437 aaKnown RBP12.55□□□□□ -0.4
USP40-205ENST00000430158 GRM3Q14832 879 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 TTC31Q49AM3 519 aaPredicted RBP12.55□□□□□ -0.4
USP40-205ENST00000430158 PMS2CLQ68D20 193 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 DRICH1Q6PGQ1 229 aaPredicted RBP12.55□□□□□ -0.4
USP40-205ENST00000430158 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.55□□□□□ -0.4
USP40-205ENST00000430158 ERN2Q76MJ5 926 aaKnown RBP12.55□□□□□ -0.4
USP40-205ENST00000430158 ADAT2Q7Z6V5 191 aaKnown RBP12.55□□□□□ -0.4
USP40-205ENST00000430158 SLC41A1Q8IVJ1 513 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 KLHDC8BQ8IXV7 354 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 ZNF567Q8N184 647 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 RYBPQ8N488 228 aaPredicted RBP12.55□□□□□ -0.4
USP40-205ENST00000430158 PRELID2Q8N945 189 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 NSMCE1Q8WV22 266 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 RTP4Q96DX8 246 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 IMP4Q96G21 291 aaKnown RBP12.55□□□□□ -0.4
USP40-205ENST00000430158 MS4A14Q96JA4 679 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 KLHL32Q96NJ5 620 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 PHOX2BQ99453 314 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 GORASP1Q9BQQ3 440 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 ORAI3Q9BRQ5 295 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 OSBPL1AQ9BXW6 950 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 CEP41Q9BYV8 373 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 SUV39H2Q9H5I1 410 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 SGK2Q9HBY8 427 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 GLOD4Q9HC38 313 aa12.55□□□□□ -0.4
USP40-205ENST00000430158 CEP250Q9BV73 2442 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 H7C0C1 242 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 ZNF185O15231 689 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 PLRG1O43660 514 aaKnown RBP12.54□□□□□ -0.4
USP40-205ENST00000430158 RNASEH2AO75792 299 aaKnown RBP12.54□□□□□ -0.4
USP40-205ENST00000430158 ACADMP11310 421 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 ADRB3P13945 408 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 MSNP26038 577 aaKnown RBP12.54□□□□□ -0.4
USP40-205ENST00000430158 ATP5OP48047 213 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 RAD51Q06609 339 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 SLC14A2Q15849 920 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 CCNG2Q16589 344 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 CCDC181Q5TID7 509 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 FAM124AQ86V42 546 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 CDKL3Q8IVW4 592 aaPredicted RBP12.54□□□□□ -0.4
USP40-205ENST00000430158 BBS5Q8N3I7 341 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 C1orf216Q8TAB5 229 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 ACTRT1Q8TDG2 376 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 C1orf54Q8WWF1 131 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 ATOH1Q92858 354 aaPredicted RBP12.54□□□□□ -0.4
USP40-205ENST00000430158 AGAP3Q96P47 875 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 VAT1Q99536 393 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 NAPGQ99747 312 aaPredicted RBP12.54□□□□□ -0.4
USP40-205ENST00000430158 FRMD8P1Q9BZ68 369 aaPredicted RBP12.54□□□□□ -0.4
USP40-205ENST00000430158 POLR1EQ9GZS1 481 aaKnown RBP12.54□□□□□ -0.4
USP40-205ENST00000430158 PCED1AQ9H1Q7 454 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 SLC25A51Q9H1U9 297 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 C6orf106Q9H6K1 298 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms