RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 POP4O95707 220 aaKnown RBP14.7□□□□□ -0.06
SDC1-204ENST00000429035 ITIH2P19823 946 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 TGM2P21980 687 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 RFC1P35251 1148 aaPredicted RBP14.7□□□□□ -0.06
SDC1-204ENST00000429035 COPB1P53618 953 aaKnown RBP14.7□□□□□ -0.06
SDC1-204ENST00000429035 PFN3P60673 137 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 TLE3Q04726 772 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 PTK2BQ14289 1009 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 CLEC16AQ2KHT3 1053 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 CFAP58Q5T655 872 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 FAXCQ5TGI0 409 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 GPR155Q7Z3F1 870 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 PAF1Q8N7H5 531 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 RTL3Q8N8U3 475 aaKnown RBP14.7□□□□□ -0.06
SDC1-204ENST00000429035 BTN2A2Q8WVV5 523 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 GLMNQ92990 594 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 NTAN1Q96AB6 310 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 HMCESQ96FZ2 354 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 ZNF578Q96N58 590 aaPredicted RBP14.7□□□□□ -0.06
SDC1-204ENST00000429035 LENG8Q96PV6 779 aaPredicted RBP14.7□□□□□ -0.06
SDC1-204ENST00000429035 SLC13A1Q9BZW2 595 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 KLC2Q9H0B6 622 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 SATB2Q9UPW6 733 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 COQ6Q9Y2Z9 468 aa14.7□□□□□ -0.06
SDC1-204ENST00000429035 RASA4BC9J798 803 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 INSIG1O15503 277 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 RASA4O43374 803 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 ANXA6P08133 673 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 UNGP13051 313 aaPredicted RBP14.69□□□□□ -0.06
SDC1-204ENST00000429035 DESP17661 470 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 ADKP55263 362 aaKnown RBP14.69□□□□□ -0.06
SDC1-204ENST00000429035 C19orf57Q0VDD7 668 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 PTP4A2Q12974 167 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 IRF4Q15306 451 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 KLHL40Q2TBA0 621 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 CT47A1Q5JQC4 288 aaPredicted RBP14.69□□□□□ -0.06
SDC1-204ENST00000429035 CDKAL1Q5VV42 579 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 WDR59Q6PJI9 974 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 PLPP6Q8IY26 295 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 C3orf20Q8ND61 904 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 KCNE4Q8WWG9 221 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 VCPIP1Q96JH7 1222 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.69□□□□□ -0.06
SDC1-204ENST00000429035 LRRC61Q9BV99 259 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 TTYH3Q9C0H2 523 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 CATSPERBQ9H7T0 1116 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 POLR1BQ9H9Y6 1135 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 THSD1Q9NS62 852 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 FANCLQ9NW38 375 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 NCKIPSDQ9NZQ3 722 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 SIRPGQ9P1W8 387 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 SIK3Q9Y2K2 1263 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 CSNK1G3Q9Y6M4 447 aa14.69□□□□□ -0.06
SDC1-204ENST00000429035 ATXN7O15265 892 aaPredicted RBP14.68□□□□□ -0.06
SDC1-204ENST00000429035 KLK10O43240 276 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 PCCBP05166 539 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 RPIAP49247 311 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 GSCP56915 257 aaPredicted RBP14.68□□□□□ -0.06
SDC1-204ENST00000429035 TPI1P60174 286 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 PPARDQ03181 441 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 ISXQ2M1V0 245 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 TAF1BQ53T94 588 aaPredicted RBP14.68□□□□□ -0.06
SDC1-204ENST00000429035 PERM1Q5SV97 790 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 DCUN1D2Q6PH85 259 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 MACC1Q6ZN28 852 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 RBM44Q6ZP01 1051 aaKnown RBP14.68□□□□□ -0.06
SDC1-204ENST00000429035 MON1BQ7L1V2 547 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 PHF13Q86YI8 300 aaPredicted RBP14.68□□□□□ -0.06
SDC1-204ENST00000429035 SLC35F3Q8IY50 421 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 LSMEM2Q8N112 164 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 ASB12Q8WXK4 309 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 CENPIQ92674 756 aaPredicted RBP14.68□□□□□ -0.06
SDC1-204ENST00000429035 ATXN7L3BQ96GX2 97 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 RETREG1Q9H6L5 497 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 NOL6Q9H6R4 1146 aaKnown RBP14.68□□□□□ -0.06
SDC1-204ENST00000429035 MBNL1Q9NR56 388 aaKnown RBP14.68□□□□□ -0.06
SDC1-204ENST00000429035 GPATCH2LQ9NWQ4 482 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 GULP1Q9UBP9 304 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 UBA2Q9UBT2 640 aaPredicted RBP14.68□□□□□ -0.06
SDC1-204ENST00000429035 SALL4Q9UJQ4 1053 aa14.68□□□□□ -0.06
SDC1-204ENST00000429035 CXorf51AA0A1B0GTR3 108 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 TEX51A0A1B0GUA7 166 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 LGALS16A8MUM7 142 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 AREL1O15033 823 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 GCATO75600 419 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 PRKCGP05129 697 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 CELA2BP08218 269 aaPredicted RBP14.67□□□□□ -0.06
SDC1-204ENST00000429035 CTSEP14091 401 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 RBMS1P29558 406 aaKnown RBP14.67□□□□□ -0.06
SDC1-204ENST00000429035 EIF4A3P38919 411 aaKnown RBP14.67□□□□□ -0.06
SDC1-204ENST00000429035 TMPRSS3P57727 454 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 UBXN1Q04323 297 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 C6orf132Q5T0Z8 1188 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 ARHGAP40Q5TG30 622 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 ESRP1Q6NXG1 681 aaKnown RBP14.67□□□□□ -0.06
SDC1-204ENST00000429035 RD3Q7Z3Z2 195 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 HID1Q8IV36 788 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 TP53I13Q8NBR0 393 aaPredicted RBP14.67□□□□□ -0.06
SDC1-204ENST00000429035 CASKIN2Q8WXE0 1202 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 NAT6Q93015 286 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms