RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 SREBF1P36956 1147 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 UBA7P41226 1012 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 HSPA13P48723 471 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 KLK7P49862 253 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 ADCY7P51828 1080 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 AGFG1P52594 562 aaKnown RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 RNASE9P60153 205 aaKnown RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 HGFACQ04756 655 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 DUSP2Q05923 314 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 PPIDQ08752 370 aaKnown RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 TBL3Q12788 808 aaKnown RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 CDC16Q13042 620 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 PICALMQ13492 652 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 KRT81Q14533 505 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 PDK4Q16654 411 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 ANKRD20A4Q4UJ75 823 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 GAGE13Q4V321 117 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 ACSBG2Q5FVE4 666 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 OGFOD2Q6N063 350 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 NEPROQ6NW34 567 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 DUS1LQ6P1R4 473 aaKnown RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 DHRS4L2Q6PKH6 230 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 NPNTQ6UXI9 565 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 CENPUQ71F23 418 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 CYB5R4Q7L1T6 521 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 DGLUCYQ7Z3D6 616 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 ERI1Q8IV48 349 aaKnown RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 KIAA0319LQ8IZA0 1049 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 ZDHHC14Q8IZN3 488 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 LILRA3Q8N6C8 439 aaPredicted RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 FAM156AQ8NDB6 213 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 OR14K1Q8NGZ2 314 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 SVIPQ8NHG7 77 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 CEP70Q8NHQ1 597 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 GDAP1Q8TB36 358 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 PYROXD1Q8WU10 500 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 NMD3Q96D46 503 aaKnown RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 SGF29Q96ES7 293 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 HES6Q96HZ4 224 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 NSL1Q96IY1 281 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 CDK5RAP3Q96JB5 506 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 CLPTM1LQ96KA5 538 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 AK8Q96MA6 479 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 PRICKLE1Q96MT3 831 aaPredicted RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 HAUS8Q9BT25 410 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.59□□□□□ -1.51
CLK1-202ENST00000409403 OSBPL8Q9BZF1 889 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 MRPL46Q9H2W6 279 aaKnown RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 PALMDQ9NP74 551 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 MYOZ2Q9NPC6 264 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 INIPQ9NRY2 104 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 LANCL2Q9NS86 450 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 TBC1D7Q9P0N9 293 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 UVRAGQ9P2Y5 699 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 ARMCX3Q9UH62 379 aaPredicted RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 PCYOX1Q9UHG3 505 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 MTUS1Q9ULD2 1270 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 SATB2Q9UPW6 733 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 FAM50BQ9Y247 325 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 PRRC2BQ5JSZ5 2229 aaKnown RBP5.59□□□□□ -1.51
CLK1-202ENST00000409403 RLFQ13129 1914 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 NCANO14594 1321 aa5.59□□□□□ -1.51
CLK1-202ENST00000409403 MROH6A6NGR9 719 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 KLRC4O43908 158 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 PEX1O43933 1283 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 EXOC3O60645 756 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 TRMUO75648 421 aaKnown RBP5.59□□□□□ -1.52
CLK1-202ENST00000409403 TNFAIP8O95379 198 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 H2AFZP0C0S5 128 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 ETS2P15036 469 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 HOXD10P28358 340 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 TCF7P36402 384 aaPredicted RBP5.59□□□□□ -1.52
CLK1-202ENST00000409403 RAP1GAPP47736 663 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 HK3P52790 923 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 RELAQ04206 551 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 TARDBPQ13148 414 aaKnown RBP eCLIP5.59□□□□□ -1.52
CLK1-202ENST00000409403 RAPGEF1Q13905 1077 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 NFYCQ13952 458 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 RRP1BQ14684 758 aaKnown RBP5.59□□□□□ -1.52
CLK1-202ENST00000409403 RAB39AQ14964 217 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 TBR1Q16650 682 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 TAF1BQ53T94 588 aaPredicted RBP5.59□□□□□ -1.52
CLK1-202ENST00000409403 FAM83BQ5T0W9 1011 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 DEPDC1Q5TB30 811 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 ANKRD40Q6AI12 368 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 CENPPQ6IPU0 288 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 ZNF280DQ6N043 979 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 CGB2Q6NT52 195 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 KLHL35Q6PF15 583 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 C16orf87Q6PH81 154 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 ZDHHC24Q6UX98 284 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 H2AFVQ71UI9 128 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 NLRP9Q7RTR0 991 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 CLNKQ7Z7G1 428 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 FAM124AQ86V42 546 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 PDSS2Q86YH6 399 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 KBTBD2Q8IY47 623 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 SCYL3Q8IZE3 742 aa5.59□□□□□ -1.52
CLK1-202ENST00000409403 GUF1Q8N442 669 aaKnown RBP5.59□□□□□ -1.52
CLK1-202ENST00000409403 POU5F2Q8N7G0 328 aa5.59□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms