RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 KRT10P13645 584 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 TNNT1P13805 278 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 TCP1P17987 556 aaKnown RBP9.36□□□□□ -0.91
VPS53-203ENST00000401468 MZF1P28698 734 aaPredicted RBP9.36□□□□□ -0.91
VPS53-203ENST00000401468 DEKP35659 375 aaKnown RBP9.36□□□□□ -0.91
VPS53-203ENST00000401468 CSKP41240 450 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 SULT2A1Q06520 285 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 ZNF234Q14588 700 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 POLD3Q15054 466 aaPredicted RBP9.36□□□□□ -0.91
VPS53-203ENST00000401468 SIX1Q15475 284 aaPredicted RBP9.36□□□□□ -0.91
VPS53-203ENST00000401468 TMEM259Q4ZIN3 620 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 RNF219Q5W0B1 726 aaPredicted RBP9.36□□□□□ -0.91
VPS53-203ENST00000401468 LYSMD4Q5XG99 296 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 AADACL2Q6P093 401 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 LAYNQ6UX15 382 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 APCDD1Q8J025 514 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 ACTRT1Q8TDG2 376 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 HDAC11Q96DB2 347 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 MYO19Q96H55 970 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 LOXL4Q96JB6 756 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 SPACA7Q96KW9 195 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 MRGPRX1Q96LB2 322 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 SLC39A8Q9C0K1 460 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 MKRN2Q9H000 416 aaKnown RBP9.36□□□□□ -0.91
VPS53-203ENST00000401468 BRD8Q9H0E9 1235 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 MIR1-1HGQ9H1L0 117 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 CD248Q9HCU0 757 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 DNAI1Q9UI46 699 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 HS3ST2Q9Y278 367 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 SPAARA0A1B0GVQ0 90 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 CTAGE9A4FU28 777 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 ZSCAN5CA6NGD5 496 aaPredicted RBP9.35□□□□□ -0.91
VPS53-203ENST00000401468 RASA4BC9J798 803 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 ERVH48-1M5A8F1 160 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 TM4SF5O14894 197 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 NPC1O15118 1278 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 RASA4O43374 803 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 KDELR3O43731 214 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 MAFKO60675 156 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 PRAMEF11O60813 436 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 KCNK5O95279 499 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 ASLP04424 464 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 EPHX1P07099 455 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 RHOCP08134 193 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 SRPRAP08240 638 aaKnown RBP9.35□□□□□ -0.91
VPS53-203ENST00000401468 DLDP09622 509 aaKnown RBP9.35□□□□□ -0.91
VPS53-203ENST00000401468 ENGP17813 658 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 ACVRL1P37023 503 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 CETN2P41208 172 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 GARSP41250 739 aaKnown RBP9.35□□□□□ -0.91
VPS53-203ENST00000401468 FAM193AP78312 1265 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 ARF5P84085 180 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 GBE1Q04446 702 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 IL10RBQ08334 325 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 SLC20A2Q08357 652 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 PPIDQ08752 370 aaKnown RBP9.35□□□□□ -0.91
VPS53-203ENST00000401468 ZNF211Q13398 564 aaPredicted RBP9.35□□□□□ -0.91
VPS53-203ENST00000401468 XRCC4Q13426 336 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 NOMO1Q15155 1222 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 FNDC3BQ53EP0 1204 aaKnown RBP9.35□□□□□ -0.91
VPS53-203ENST00000401468 MBLAC2Q68D91 279 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 SDE2Q6IQ49 451 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 SLC13A5Q86YT5 568 aaPredicted RBP9.35□□□□□ -0.91
VPS53-203ENST00000401468 CREG2Q8IUH2 290 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 CCDC50Q8IVM0 306 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 CCDC117Q8IWD4 279 aaPredicted RBP9.35□□□□□ -0.91
VPS53-203ENST00000401468 TP53INP2Q8IXH6 220 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 RGL4Q8IZJ4 473 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 OR7D4Q8NG98 312 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 COG1Q8WTW3 980 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 SNX19Q92543 992 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 HMCESQ96FZ2 354 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 MRGPRX3Q96LB0 322 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 ZNF599Q96NL3 588 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 CAMK1GQ96NX5 476 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 C2orf49Q9BVC5 232 aaPredicted RBP9.35□□□□□ -0.91
VPS53-203ENST00000401468 GPR174Q9BXC1 333 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 FRMD8P1Q9BZ68 369 aaPredicted RBP9.35□□□□□ -0.91
VPS53-203ENST00000401468 TMEM245Q9H330 911 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 ELOVL2Q9NXB9 296 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 PCDHGA5Q9Y5G8 931 aa9.35□□□□□ -0.91
VPS53-203ENST00000401468 TCRBV7S2A1N4TA0A589 114 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 ARHGAP42A6NI28 874 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 ATP9BO43861 1147 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 NDUFS2O75306 463 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 PECAM1P16284 738 aaPredicted RBP9.34□□□□□ -0.91
VPS53-203ENST00000401468 MX2P20592 715 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 CXCR5P32302 372 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 PAPOLAP51003 745 aaKnown RBP9.34□□□□□ -0.91
VPS53-203ENST00000401468 PRKD1Q15139 912 aaPredicted RBP9.34□□□□□ -0.91
VPS53-203ENST00000401468 E2F5Q15329 346 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 CYP1B1Q16678 543 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 HSF5Q4G112 596 aaPredicted RBP9.34□□□□□ -0.91
VPS53-203ENST00000401468 INO80DQ53TQ3 878 aaPredicted RBP9.34□□□□□ -0.91
VPS53-203ENST00000401468 ODF2Q5BJF6 829 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 ZFYVE27Q5T4F4 411 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 SEL1L2Q5TEA6 688 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 ALG1LQ6GMV1 187 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 DRICH1Q6PGQ1 229 aaPredicted RBP9.34□□□□□ -0.91
VPS53-203ENST00000401468 SERPINA13PQ6UXR4 307 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms