RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 RRN3P2A6NIE6 340 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 DFFAO00273 331 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 TRIM24O15164 1050 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 DDNO94850 711 aaPredicted RBP12.83□□□□□ -0.36
SHMT1-205ENST00000395684 C8BP07358 591 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 SMIM10L2AP0DMW4 78 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 SMIM10L2BP0DMW5 78 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 PSMC3P17980 439 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 FGFR3P22607 806 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 DNAJB2P25686 324 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 SLC5A2P31639 672 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 EPHX2P34913 555 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 NR1H2P55055 460 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 RHDQ02161 417 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 SNX17Q15036 470 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 FAM35AQ86V20 835 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 GRIN3AQ8TCU5 1115 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 DDI1Q8WTU0 396 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 ZNF597Q96LX8 424 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 SLC29A1Q99808 456 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 UNC93B1Q9H1C4 597 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 CYP4F12Q9HCS2 524 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 IGSF5Q9NSI5 407 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 CCDC167Q9P0B6 97 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 AAR2Q9Y312 384 aaKnown RBP12.83□□□□□ -0.36
SHMT1-205ENST00000395684 MRPL42Q9Y6G3 142 aaKnown RBP12.83□□□□□ -0.36
SHMT1-205ENST00000395684 CEPT1Q9Y6K0 416 aa12.83□□□□□ -0.36
SHMT1-205ENST00000395684 TMCC1O94876 653 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 ATP5F1P24539 256 aaPredicted RBP12.82□□□□□ -0.36
SHMT1-205ENST00000395684 DNAJB13P59910 316 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 USP46P62068 366 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 CDC42EP1Q00587 391 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 IKBKEQ14164 716 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 CSHL1Q14406 222 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 CYTH1Q15438 398 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 TBC1D25Q3MII6 688 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 TMEM259Q4ZIN3 620 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 ZNF789Q5FWF6 425 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 ZNF470Q6ECI4 717 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 KDELC2Q7Z4H8 507 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 PNPLA1Q8N8W4 532 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 LPGAT1Q92604 370 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 TSGA13Q96PP4 275 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 FICDQ9BVA6 458 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 RHOBTB2Q9BYZ6 727 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 ATXN3LQ9H3M9 355 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 PDCD11Q14690 1871 aaKnown RBP12.82□□□□□ -0.36
SHMT1-205ENST00000395684 SMIM35A0A1B0GVV1 85 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 HHLA1C9JL84 531 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 PSMD3O43242 534 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 HNRNPRO43390 633 aaKnown RBP12.82□□□□□ -0.36
SHMT1-205ENST00000395684 F9P00740 461 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 PYGLP06737 847 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 NELFEP18615 380 aaKnown RBP12.82□□□□□ -0.36
SHMT1-205ENST00000395684 CDH2P19022 906 aaPredicted RBP12.82□□□□□ -0.36
SHMT1-205ENST00000395684 AXLP30530 894 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 LRPAP1P30533 357 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 POLD2P49005 469 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 STX5Q13190 355 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 PCBP1Q15365 356 aaKnown RBP eCLIP12.82□□□□□ -0.36
SHMT1-205ENST00000395684 AGKQ53H12 422 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 RBM20Q5T481 1227 aaKnown RBP12.82□□□□□ -0.36
SHMT1-205ENST00000395684 REP15Q6BDI9 236 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 RWDD4Q6NW29 188 aaKnown RBP12.82□□□□□ -0.36
SHMT1-205ENST00000395684 BORAQ6PGQ7 559 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 DCLRE1AQ6PJP8 1040 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 CYP2R1Q6VVX0 501 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 RNF135Q8IUD6 432 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 C2CD4AQ8NCU7 369 aaPredicted RBP12.82□□□□□ -0.36
SHMT1-205ENST00000395684 GPRC5AQ8NFJ5 357 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 ZNF512Q96ME7 567 aaPredicted RBP12.82□□□□□ -0.36
SHMT1-205ENST00000395684 FCRL5Q96RD9 977 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 PREBQ9HCU5 417 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 SARDHQ9UL12 918 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 NEU3Q9UQ49 428 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 TCAF1Q9Y4C2 921 aa12.82□□□□□ -0.36
SHMT1-205ENST00000395684 MEIS3P2A8K0S8 358 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 BTBD19C9JJ37 291 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 PSMD12O00232 456 aaPredicted RBP12.81□□□□□ -0.36
SHMT1-205ENST00000395684 GJA5P36382 358 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 RANBP1P43487 201 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 CHRNA4P43681 627 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 PLK1P53350 603 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 TXNL4AP83876 142 aaKnown RBP12.81□□□□□ -0.36
SHMT1-205ENST00000395684 FASTKQ14296 549 aaKnown RBP12.81□□□□□ -0.36
SHMT1-205ENST00000395684 MTX3Q5HYI7 312 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 TAC4Q86UU9 113 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 ARHGAP12Q8IWW6 846 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 NUP93Q8N1F7 819 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 TSPAN14Q8NG11 270 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 TMIGD2Q96BF3 282 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 SENP8Q96LD8 212 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 OLFM1Q99784 485 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 TRPV6Q9H1D0 765 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 MEAF6Q9HAF1 191 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 TREX1Q9NSU2 369 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 CD300AQ9UGN4 299 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 FBXO5Q9UKT4 447 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 PADI4Q9UM07 663 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 SNX13Q9Y5W8 968 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms