RNA–Protein interactions for RNA: ENST00000394986.5

SNCA-203, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNCA, Length 1,420 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-203ENST00000394986 SYCP2LQ5T4T6 812 aa20.13■□□□□ 0.81
SNCA-203ENST00000394986 CCDC181Q5TID7 509 aa20.13■□□□□ 0.81
SNCA-203ENST00000394986 ZSWIM9Q86XI8 627 aa20.13■□□□□ 0.81
SNCA-203ENST00000394986 FATE1Q969F0 183 aa20.13■□□□□ 0.81
SNCA-203ENST00000394986 NUDCD1Q96RS6 583 aa20.13■□□□□ 0.81
SNCA-203ENST00000394986 ATP13A3Q9H7F0 1226 aa20.13■□□□□ 0.81
SNCA-203ENST00000394986 C10orf88Q9H8K7 445 aa20.13■□□□□ 0.81
SNCA-203ENST00000394986 SCUBE2Q9NQ36 999 aa20.13■□□□□ 0.81
SNCA-203ENST00000394986 C10orf142B7Z368 130 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 APOC4-APOC2K7ER74 178 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 NEBLO76041 1014 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 APOC2P02655 101 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 TGM1P22735 817 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 MAT2AP31153 395 aaKnown RBP20.12■□□□□ 0.81
SNCA-203ENST00000394986 AP1S1P61966 158 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 IFI35P80217 286 aaPredicted RBP20.12■□□□□ 0.81
SNCA-203ENST00000394986 OTUD4Q01804 1114 aaKnown RBP20.12■□□□□ 0.81
SNCA-203ENST00000394986 DSC2Q02487 901 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 PRKD1Q15139 912 aaPredicted RBP20.12■□□□□ 0.81
SNCA-203ENST00000394986 SF3A2Q15428 464 aaKnown RBP20.12■□□□□ 0.81
SNCA-203ENST00000394986 WDR45BQ5MNZ6 344 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 PLA2G2CQ5R387 149 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 SYT12Q8IV01 421 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 ZCCHC9Q8N567 271 aaKnown RBP20.12■□□□□ 0.81
SNCA-203ENST00000394986 TRIM58Q8NG06 486 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 TUBGCP5Q96RT8 1024 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 SEMA3CQ99985 751 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 PCED1AQ9H1Q7 454 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 EBF2Q9HAK2 575 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 SEMA4GQ9NTN9 838 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 EFR3BQ9Y2G0 817 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 FADS3Q9Y5Q0 445 aa20.12■□□□□ 0.81
SNCA-203ENST00000394986 RIF1Q5UIP0 2472 aaKnown RBP20.11■□□□□ 0.81
SNCA-203ENST00000394986 TCRBV7S2A1N4TA0A589 114 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 USP27XA6NNY8 438 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 RNGTTO60942 597 aaKnown RBP20.11■□□□□ 0.81
SNCA-203ENST00000394986 PRKCGP05129 697 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 TIMP2P16035 220 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 SERPINA4P29622 427 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 CETN2P41208 172 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 BCL2L1Q07817 233 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 IHHQ14623 411 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 GRM3Q14832 879 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 NOMO1Q15155 1222 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 RPS6KA1Q15418 735 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 CFAP58Q5T655 872 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 CNTD1Q8N815 330 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 ACTL9Q8TC94 416 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 TFB1MQ8WVM0 346 aaKnown RBP20.11■□□□□ 0.81
SNCA-203ENST00000394986 DNASE2BQ8WZ79 361 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 KLK6Q92876 244 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 IL12RB2Q99665 862 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 ORAI3Q9BRQ5 295 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 POLR1EQ9GZS1 481 aaKnown RBP20.11■□□□□ 0.81
SNCA-203ENST00000394986 PREBQ9HCU5 417 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 PCDHGC4Q9Y5F7 938 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 PIEZO1Q92508 2521 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 SHROOM3Q8TF72 1996 aa20.11■□□□□ 0.81
SNCA-203ENST00000394986 TSPAN11A1L157 253 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 TRAFD1O14545 582 aaPredicted RBP20.1■□□□□ 0.81
SNCA-203ENST00000394986 ZSCAN12O43309 604 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 PCDH8O95206 1070 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 MAPK8P45983 427 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 NIPAL4Q0D2K0 466 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 CCDC15Q0P6D6 951 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 TRAF2Q12933 501 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 PEAR1Q5VY43 1037 aaPredicted RBP20.1■□□□□ 0.81
SNCA-203ENST00000394986 BZW1Q7L1Q6 419 aaKnown RBP20.1■□□□□ 0.81
SNCA-203ENST00000394986 TTC7BQ86TV6 843 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 ZNF641Q96N77 438 aaPredicted RBP20.1■□□□□ 0.81
SNCA-203ENST00000394986 QKIQ96PU8 341 aaKnown RBP eCLIP20.1■□□□□ 0.81
SNCA-203ENST00000394986 TLR10Q9BXR5 811 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 BRD8Q9H0E9 1235 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 KDM4CQ9H3R0 1056 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 FSCN3Q9NQT6 498 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 DKK3Q9UBP4 350 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 ZFR2Q9UPR6 939 aaKnown RBP20.1■□□□□ 0.81
SNCA-203ENST00000394986 ATP8A1Q9Y2Q0 1164 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 GVINP1Q7Z2Y8 2422 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 TNRC6BQ9UPQ9 1833 aaKnown RBP20.1■□□□□ 0.81
SNCA-203ENST00000394986 A0A1W2PQU0 124 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 TJP3O95049 919 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 PTPN3P26045 913 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 CCR5P51681 352 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 SEMG2Q02383 582 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 SEL1L3Q68CR1 1132 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 ALG1LQ6GMV1 187 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 KIAA2013Q8IYS2 634 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 C1orf216Q8TAB5 229 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 ARRDC2Q8TBH0 407 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 PDCD6IPQ8WUM4 868 aaKnown RBP20.1■□□□□ 0.81
SNCA-203ENST00000394986 ECHDC3Q96DC8 303 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 AGAP3Q96P47 875 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 VPS45Q9NRW7 570 aa20.1■□□□□ 0.81
SNCA-203ENST00000394986 R3HDM2Q9Y2K5 976 aaKnown RBP20.1■□□□□ 0.81
SNCA-203ENST00000394986 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.1■□□□□ 0.81
SNCA-203ENST00000394986 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.09■□□□□ 0.81
SNCA-203ENST00000394986 H7C0C1 242 aa20.09■□□□□ 0.81
SNCA-203ENST00000394986 NEMP1O14524 444 aa20.09■□□□□ 0.81
SNCA-203ENST00000394986 KCNK3O14649 394 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms