RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 BUB3O43684 328 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 STRNO43815 780 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 CCNT1O60563 726 aaKnown RBP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 SSTR2P30874 369 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 DHX34Q14147 1143 aaKnown RBP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 KIF19Q2TAC6 998 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 SETMARQ53H47 684 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 RHBDF2Q6PJF5 856 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 MEX3BQ6ZN04 569 aaKnown RBP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 ZNF771Q7L3S4 317 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 LRRTM4Q86VH4 590 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 CPOQ8IVL8 374 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 ZDHHC23Q8IYP9 409 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 RBFAQ8N0V3 343 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 TCP11L2Q8N4U5 519 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 SETD9Q8NE22 299 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 OR4N2Q8NGD1 307 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 TBC1D22AQ8WUA7 517 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 USP13Q92995 863 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 RBM17Q96I25 401 aaKnown RBP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 ADGRG7Q96K78 797 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 TBATAQ96M53 351 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 INPP4AQ96PE3 977 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 TEFMQ96QE5 360 aaKnown RBP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 TMEM51Q9NW97 253 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 GRHL1Q9NZI5 618 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 IFT80Q9P2H3 777 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-206ENST00000376646 IL36RNQ9UBH0 155 aa2.31□□□□□ -2.04
VPS13A-206ENST00000376646 C11orf97A0A1B0GVM6 126 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-206ENST00000376646 OR6C68A6NDL8 312 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 TMEM247A6NEH6 219 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 NPIPB11E5RHQ5 1161 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 STX16-NPEPL1H3BU86 382 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 STX16O14662 325 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 SLC16A5O15375 505 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 UMODP07911 640 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 SNRNP70P08621 437 aaKnown RBP2.3□□□□□ -2.04
VPS13A-206ENST00000376646 PNPLA4P41247 253 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 PAPOLAP51003 745 aaKnown RBP2.3□□□□□ -2.04
VPS13A-206ENST00000376646 ACTR2P61160 394 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 SLC12A1Q13621 1099 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 RALBP1Q15311 655 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 SMAD1Q15797 465 aaKnown RBP2.3□□□□□ -2.04
VPS13A-206ENST00000376646 JAKMIP3Q5VZ66 844 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 AADACL2Q6P093 401 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 TMED8Q6PL24 325 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-206ENST00000376646 MUC20Q8N307 709 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-206ENST00000376646 IL17REQ8NFR9 667 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 CEP70Q8NHQ1 597 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 TMEM163Q8TC26 289 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 KTI12Q96EK9 354 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-206ENST00000376646 MAELQ96JY0 434 aaKnown RBP2.3□□□□□ -2.04
VPS13A-206ENST00000376646 TWSG1Q9GZX9 223 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 TCF7L2Q9NQB0 619 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 PDP2Q9P2J9 529 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 PGAP2Q9UHJ9 254 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 CRYL1Q9Y2S2 319 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 FAM157AC9JC47 383 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 IL1AP01583 271 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 IGLV2-11P01706 119 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 TK1P04183 234 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 MMP3P08254 477 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 SLC18A2Q05940 514 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 THOC5Q13769 683 aaKnown RBP2.3□□□□□ -2.04
VPS13A-206ENST00000376646 RPE65Q16518 533 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 XKR9Q5GH70 373 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 MON1AQ86VX9 555 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 TMEM57Q8N5G2 664 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 ESX1Q8N693 406 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 ZNF114Q8NC26 417 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 RFWD2Q8NHY2 731 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 NEK9Q8TD19 979 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 HERVK_113Q902F9 699 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 RNFT2Q96EX2 444 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 SCMH1Q96GD3 660 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 YME1L1Q96TA2 773 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 CSF3RQ99062 836 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 G6PC2Q9NQR9 355 aa2.3□□□□□ -2.04
VPS13A-206ENST00000376646 ERRFI1Q9UJM3 462 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-206ENST00000376646 A0A1B0GVC2 190 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 A0A1B0GVM2 712 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 XPNPEP2O43895 674 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 SOCS5O75159 536 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 CH25HO95992 272 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 TFRCP02786 760 aaKnown RBP2.29□□□□□ -2.04
VPS13A-206ENST00000376646 TCEA1P23193 301 aaKnown RBP2.29□□□□□ -2.04
VPS13A-206ENST00000376646 YWHAQP27348 245 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 PIGAP37287 484 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 TUBP50607 506 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 ILF3Q12906 894 aaKnown RBP eCLIP2.29□□□□□ -2.04
VPS13A-206ENST00000376646 TRAF2Q12933 501 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 G3BP1Q13283 466 aaKnown RBP eCLIP2.29□□□□□ -2.04
VPS13A-206ENST00000376646 SNTA1Q13424 505 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 EFR3AQ14156 821 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 HEATR4Q86WZ0 1026 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 TMTC1Q8IUR5 882 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 MB21D2Q8IYB1 491 aaPredicted RBP2.29□□□□□ -2.04
VPS13A-206ENST00000376646 TEX19Q8NA77 164 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 ARRDC2Q8TBH0 407 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 SDCCAG3Q96C92 435 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms