RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ANKRD20A8PQ5CZ79 823 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 KCNT1Q5JUK3 1230 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SNX30Q5VWJ9 437 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 RNF219Q5W0B1 726 aaPredicted RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 FAM160B1Q5W0V3 765 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 C8orf74Q6P047 294 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 C8orf82Q6P1X6 216 aaPredicted RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 ADGRF2Q8IZF7 708 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PPP1R35Q8TAP8 253 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 C10orf82Q8WW14 230 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CHFRQ96EP1 664 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PTCD3Q96EY7 689 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 TMEM169Q96HH4 297 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 RMDN2Q96LZ7 410 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 QKIQ96PU8 341 aaKnown RBP eCLIP2.38□□□□□ -2.031e-8■■■□□ 17.9
VPS54-202ENST00000354504 RNF157Q96PX1 679 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SORT1Q99523 831 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TMEM121Q9BTD3 319 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 APOL5Q9BWW9 433 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 OSBPL8Q9BZF1 889 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CWH43Q9H720 699 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 RGS18Q9NS28 235 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 POLR3BQ9NW08 1133 aaPredicted RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 GPATCH2Q9NW75 528 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CPA4Q9UI42 421 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 HAO1Q9UJM8 370 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PLA2G4CQ9UP65 541 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TBC1D30Q9Y2I9 924 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CACNA1IQ9P0X4 2223 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 BOD1L1Q8NFC6 3051 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 LRRIQ4A6NIV6 560 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 GOLGA8KD6RF30 607 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 H0YCG3 227 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CLDN5O00501 218 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CEP104O60308 925 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 AVILO75366 819 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TOP3BO95985 862 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 ALDOAP04075 364 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 MED14OSP0DP75 135 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 VDRP11473 427 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 AXLP30530 894 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 GLUD2P49448 558 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 LIG4P49917 911 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 RWDD2BP57060 319 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PCBP3P57721 371 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 SLC6A3Q01959 620 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 BTKQ06187 659 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PPFIA1Q13136 1202 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SEMA5AQ13591 1074 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 MYBPC3Q14896 1274 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 LLGL1Q15334 1064 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 NR0B2Q15466 257 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SLC14A2Q15849 920 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 MAPK6Q16659 721 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CDKN3Q16667 212 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TUBB8Q3ZCM7 444 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TDRD12Q587J7 1177 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 IL31Q6EBC2 164 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PGM2L1Q6PCE3 622 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CYP2R1Q6VVX0 501 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SYDE1Q6ZW31 735 aaPredicted RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 B4GALNT4Q76KP1 1039 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 HOOK3Q86VS8 718 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 UNC93AQ86WB7 457 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 RASGRP3Q8IV61 690 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CNTN4Q8IWV2 1026 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 KLHL7Q8IXQ5 586 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 FAM217AQ8IXS0 508 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 UNC5BQ8IZJ1 945 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CNPY4Q8N129 248 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PGBD5Q8N414 524 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CPA6Q8N4T0 437 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CELF5Q8N6W0 485 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 DDX51Q8N8A6 666 aaKnown RBP eCLIP2.38□□□□□ -2.03
VPS54-202ENST00000354504 ANKRD52Q8NB46 1076 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 ZNF473Q8WTR7 871 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 DNAJB3Q8WWF6 145 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CKAP2Q8WWK9 683 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 WBP2Q969T9 261 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 FAM81BQ96LP2 452 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SNRNP25Q9BV90 132 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 TRPV6Q9H1D0 765 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 C12orf65Q9H3J6 166 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 PRDM16Q9HAZ2 1276 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TNFRSF12AQ9NP84 129 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SLAMF8Q9P0V8 285 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 FAM50BQ9Y247 325 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SNX24Q9Y343 169 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 KALRNO60229 2985 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 ALG1L2C9J202 215 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PI4K2BG5E9Z4 385 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 H7BY64 318 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TRAFD1O14545 582 aaPredicted RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 XPO1O14980 1071 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 CA12O43570 354 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 KDM1AO60341 852 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 GJB3O75712 270 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PIAS1O75925 651 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 FAM107AO95990 144 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PRKCAP17252 672 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms