RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 OTOP3Q7RTS5 596 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 PELI3Q8N2H9 469 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 SPPL2BQ8TCT7 592 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 NFKBIZQ9BYH8 718 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 RCOR3Q9P2K3 495 aaPredicted RBP22.59■■□□□ 1.21
TRIM28-202ENST00000341753 AURKCQ9UQB9 309 aa22.59■■□□□ 1.21
TRIM28-202ENST00000341753 PSMD12O00232 456 aaPredicted RBP22.58■■□□□ 1.21
TRIM28-202ENST00000341753 SMPD1P17405 629 aa22.58■■□□□ 1.21
TRIM28-202ENST00000341753 SLC7A2P52569 658 aa22.58■■□□□ 1.21
TRIM28-202ENST00000341753 POU6F1Q14863 301 aa22.58■■□□□ 1.21
TRIM28-202ENST00000341753 NHSL2Q5HYW2 709 aa22.58■■□□□ 1.21
TRIM28-202ENST00000341753 ARHGAP17Q68EM7 881 aa22.58■■□□□ 1.21
TRIM28-202ENST00000341753 SMYD5Q6GMV2 418 aa22.58■■□□□ 1.21
TRIM28-202ENST00000341753 CTU1Q7Z7A3 348 aaKnown RBP22.58■■□□□ 1.21
TRIM28-202ENST00000341753 SMYD1Q8NB12 490 aa22.58■■□□□ 1.21
TRIM28-202ENST00000341753 PPTC7Q8NI37 304 aa22.58■■□□□ 1.21
TRIM28-202ENST00000341753 GPR78Q96P69 363 aa22.58■■□□□ 1.21
TRIM28-202ENST00000341753 BEST1O76090 585 aa22.58■■□□□ 1.2
TRIM28-202ENST00000341753 STAU1O95793 577 aaKnown RBP22.58■■□□□ 1.2
TRIM28-202ENST00000341753 KCNA5P22460 613 aa22.58■■□□□ 1.2
TRIM28-202ENST00000341753 SLC7A1P30825 629 aa22.58■■□□□ 1.2
TRIM28-202ENST00000341753 GIPC3Q8TF64 312 aa22.58■■□□□ 1.2
TRIM28-202ENST00000341753 SPAG4Q9NPE6 437 aa22.58■■□□□ 1.2
TRIM28-202ENST00000341753 MRASO14807 208 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 JCHAINP01591 159 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 HSPA1AP0DMV8 641 aaKnown RBP22.57■■□□□ 1.2
TRIM28-202ENST00000341753 HSPA1BP0DMV9 641 aaKnown RBP22.57■■□□□ 1.2
TRIM28-202ENST00000341753 YWHAQP27348 245 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 GNL1P36915 607 aaPredicted RBP22.57■■□□□ 1.2
TRIM28-202ENST00000341753 CCR3P51677 355 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 HK2P52789 917 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 PRAMEF19Q5SWL8 479 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 TTC33Q6PID6 262 aaPredicted RBP22.57■■□□□ 1.2
TRIM28-202ENST00000341753 PATL1Q86TB9 770 aaKnown RBP22.57■■□□□ 1.2
TRIM28-202ENST00000341753 CBR4Q8N4T8 237 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 SPATA22Q8NHS9 363 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 LRCH3Q96II8 777 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 CELF6Q96J87 481 aaKnown RBP22.57■■□□□ 1.2
TRIM28-202ENST00000341753 MAELQ96JY0 434 aaKnown RBP22.57■■□□□ 1.2
TRIM28-202ENST00000341753 BIRC8Q96P09 236 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 ANKRD60Q9BZ19 345 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 PLGRKTQ9HBL7 147 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 CHST12Q9NRB3 414 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 SMOXQ9NWM0 555 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 UTP6Q9NYH9 597 aaKnown RBP22.57■■□□□ 1.2
TRIM28-202ENST00000341753 FAM95CA0A1B0GW59 222 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 TCRBV3S1A0A5B6 114 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 TRPC5OSA6NMA1 111 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 UBDO15205 165 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 ATP6V1B2P21281 511 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 AKAP5P24588 427 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 CSRP3P50461 194 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 STX5Q13190 355 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 KDELC2Q7Z4H8 507 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 LZTR1Q8N653 840 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 HEXDCQ8WVB3 486 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 ELMO2Q96JJ3 720 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 KATNBL1Q9H079 304 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 GBA3Q9H227 469 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 FBRSL1Q9HCM7 1045 aaKnown RBP22.57■■□□□ 1.2
TRIM28-202ENST00000341753 FAIMQ9NVQ4 179 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 SQORQ9Y6N5 450 aa22.57■■□□□ 1.2
TRIM28-202ENST00000341753 NUP205Q92621 2012 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 SH3PXD2BA1X283 911 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 C9JVG2 144 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 ATE1O95260 518 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 STAMBPO95630 424 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 CBX3Q13185 183 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 OSMRQ99650 979 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 NCKIPSDQ9NZQ3 722 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 KLK14Q9P0G3 267 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 SLC8A2Q9UPR5 921 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 SPTLC1O15269 473 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 VARSP26640 1264 aaKnown RBP22.56■■□□□ 1.2
TRIM28-202ENST00000341753 SOX11P35716 441 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 MAPK10P53779 464 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 TPI1P60174 286 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 RAB10P61026 200 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 GPR180Q86V85 440 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 SLC2A6Q9UGQ3 507 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 IPO11Q9UI26 975 aaKnown RBP22.56■■□□□ 1.2
TRIM28-202ENST00000341753 DOLKQ9UPQ8 538 aa22.56■■□□□ 1.2
TRIM28-202ENST00000341753 H0YJX3 145 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 AURKAO14965 403 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 STMN1P16949 149 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 LRPAP1P30533 357 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 TAS2R39P59534 338 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 CSHL1Q14406 222 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 KCTD21Q4G0X4 260 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 DPP9Q86TI2 863 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 DHFR2Q86XF0 187 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 TFAP2CQ92754 450 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 PBXIP1Q96AQ6 731 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 TRIM8Q9BZR9 551 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 EGFL7Q9UHF1 273 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 CITO14578 2027 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 GPC4O75487 556 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 HOXA11P31270 313 aaPredicted RBP22.55■■□□□ 1.2
TRIM28-202ENST00000341753 NUP107P57740 925 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 ESRRGP62508 458 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms