RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 ENTPD7Q9NQZ7 604 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 TMEM216Q9P0N5 145 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 IPO11Q9UI26 975 aaKnown RBP10.45□□□□□ -0.74
UPF3B-201ENST00000276201 BLOC1S6Q9UL45 172 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 SH3GLB1Q9Y371 365 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 RAP2CQ9Y3L5 183 aa10.45□□□□□ -0.74
UPF3B-201ENST00000276201 HIDE1A8MVS5 230 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 H3BNH8 94 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 CBFA2T3O75081 653 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 H6PDO95479 791 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 PDGFRAP16234 1089 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 SCNN1AP37088 669 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 CSRP3P50461 194 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 ERFP50548 548 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 THOP1P52888 689 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 PHEXP78562 749 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 TRAP1Q12931 704 aaKnown RBP10.44□□□□□ -0.74
UPF3B-201ENST00000276201 ZNF394Q53GI3 561 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 POTEHQ6S545 545 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 RNF168Q8IYW5 571 aaPredicted RBP10.44□□□□□ -0.74
UPF3B-201ENST00000276201 TSPAN14Q8NG11 270 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 PDCD6IPQ8WUM4 868 aaKnown RBP10.44□□□□□ -0.74
UPF3B-201ENST00000276201 AUTS2Q8WXX7 1259 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 C18orf25Q96B23 403 aaPredicted RBP10.44□□□□□ -0.74
UPF3B-201ENST00000276201 TMEM176AQ96HP8 235 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 DNAJC1Q96KC8 554 aaKnown RBP10.44□□□□□ -0.74
UPF3B-201ENST00000276201 PRPF18Q99633 342 aaKnown RBP10.44□□□□□ -0.74
UPF3B-201ENST00000276201 COLEC11Q9BWP8 271 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 IL22Q9GZX6 179 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 GOLGA2P5Q9HBQ8 144 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 PNPLA3Q9NST1 481 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 IGSF9Q9P2J2 1179 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 RCOR3Q9P2K3 495 aaPredicted RBP10.44□□□□□ -0.74
UPF3B-201ENST00000276201 SUCOQ9UBS9 1254 aaKnown RBP10.44□□□□□ -0.74
UPF3B-201ENST00000276201 SARDHQ9UL12 918 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 A0A0A0MRY4 1105 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 DYTNA2CJ06 578 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 TMEM221A6NGB7 291 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 LACTBL1A8MY62 500 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 G3V2L1 256 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 TRIM38O00635 465 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 HDAC3O15379 428 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 TRIM13O60858 407 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 HSPA4LO95757 839 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 P4HA1P13674 534 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 XRCC1P18887 633 aaPredicted RBP10.44□□□□□ -0.74
UPF3B-201ENST00000276201 IGFBP6P24592 240 aaPredicted RBP10.44□□□□□ -0.74
UPF3B-201ENST00000276201 PCSK6P29122 969 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 PPARGP37231 505 aaPredicted RBP10.44□□□□□ -0.74
UPF3B-201ENST00000276201 NRIP1P48552 1158 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 SCNN1BP51168 640 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 CDKL1Q00532 357 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 INCA1Q0VD86 236 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 CCDC14Q49A88 953 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 KCTD21Q4G0X4 260 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 SLC9B1Q4ZJI4 515 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 LCLAT1Q6UWP7 414 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 TAS1R1Q7RTX1 841 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 TMEM130Q8N3G9 435 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 SMYD1Q8NB12 490 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 SGF29Q96ES7 293 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 CNBD2Q96M20 576 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 SPATA13Q96N96 652 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 PKP2Q99959 881 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 OSBPL6Q9BZF3 934 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 ELOVL4Q9GZR5 314 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 ILKAPQ9H0C8 392 aaPredicted RBP10.44□□□□□ -0.74
UPF3B-201ENST00000276201 EFCAB1Q9HAE3 211 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 PLEKHA5Q9HAU0 1116 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 NGRNQ9NPE2 291 aaKnown RBP10.44□□□□□ -0.74
UPF3B-201ENST00000276201 ITGB1BP2Q9UKP3 347 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 ANKRD6Q9Y2G4 727 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 WDR37Q9Y2I8 494 aa10.44□□□□□ -0.74
UPF3B-201ENST00000276201 LOC100653049A0A140TA62 436 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 H3BSA7 217 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 KRT34O76011 436 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 TOP3BO95985 862 aaKnown RBP10.43□□□□□ -0.74
UPF3B-201ENST00000276201 CTSAP10619 480 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 SPRP35270 261 aaPredicted RBP10.43□□□□□ -0.74
UPF3B-201ENST00000276201 PTPN9P43378 593 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 NUDT2P50583 147 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 CSE1LP55060 971 aaKnown RBP10.43□□□□□ -0.74
UPF3B-201ENST00000276201 NSUN2Q08J23 767 aaKnown RBP eCLIP10.43□□□□□ -0.74
UPF3B-201ENST00000276201 CEACAM7Q14002 265 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 MGAT5BQ3V5L5 792 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 KLHL35Q6PF15 583 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 RBM23Q86U06 439 aaKnown RBP10.43□□□□□ -0.74
UPF3B-201ENST00000276201 SNX32Q86XE0 403 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 ZDHHC17Q8IUH5 632 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 PACRGLQ8N7B6 248 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 TERB1Q8NA31 727 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 TDRD5Q8NAT2 981 aaKnown RBP10.43□□□□□ -0.74
UPF3B-201ENST00000276201 HASPINQ8TF76 798 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 VPS50Q96JG6 964 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 RBBP8Q99708 897 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 SNRNP25Q9BV90 132 aaKnown RBP10.43□□□□□ -0.74
UPF3B-201ENST00000276201 HERC2P3Q9BVR0 1158 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 NUF2Q9BZD4 464 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 GPR62Q9BZJ7 368 aa10.43□□□□□ -0.74
UPF3B-201ENST00000276201 DRC3Q9H069 523 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms