RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CCDC160A6NGH7 325 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 CFLARO15519 480 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 IPO13O94829 963 aaKnown RBP13.77□□□□□ -0.2
LDLR-201ENST00000252444 CAPRIN1Q14444 709 aaKnown RBP13.77□□□□□ -0.2
LDLR-201ENST00000252444 MSANTD2Q6P1R3 559 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 BRAT1Q6PJG6 821 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 GET4Q7L5D6 327 aaPredicted RBP13.77□□□□□ -0.2
LDLR-201ENST00000252444 GPSM1Q86YR5 675 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 AADATQ8N5Z0 425 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 PRCCQ92733 491 aaPredicted RBP13.77□□□□□ -0.2
LDLR-201ENST00000252444 CORO2BQ9UQ03 480 aa13.77□□□□□ -0.2
LDLR-201ENST00000252444 NT5C1B-RDH14C9J2C7 533 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 NEDD8-MDP1E9PL57 170 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 SLC28A1O00337 649 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 SLC7A4O43246 635 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 CUL3Q13618 768 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 TRPM8Q7Z2W7 1104 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 LZICQ8WZA0 190 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 PCBD2Q9H0N5 130 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 ASB8Q9H765 288 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 EFCAB1Q9HAE3 211 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 SLC27A6Q9Y2P4 619 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 EDDM13A0A1B0GTR0 161 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 ADAMTS4O75173 837 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 GRIA4P48058 902 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 LIG3P49916 1009 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 SCAPQ12770 1279 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 KLHDC10Q6PID8 442 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 ANGPTL8Q6UXH0 198 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 C7orf57Q8NEG2 295 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 DCTN4Q9UJW0 460 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 ADAMTS3O15072 1205 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 ELFN1P0C7U0 828 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 CCNFP41002 786 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 FUKQ8N0W3 1084 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 SEC16BQ96JE7 1060 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 PTPN18Q99952 460 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 AGO3Q9H9G7 860 aaKnown RBP13.77□□□□□ -0.21
LDLR-201ENST00000252444 OPTCQ9UBM4 332 aa13.77□□□□□ -0.21
LDLR-201ENST00000252444 LRIG2O94898 1065 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 CHRNA1P02708 482 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 KITP10721 976 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 FCGR1AP12314 374 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 SLC14A2Q15849 920 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 INAVAQ3KP66 663 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 OR52K1Q8NGK4 314 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 NPY6RQ99463 290 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 XYLT2Q9H1B5 865 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 SUDS3Q9H7L9 328 aaPredicted RBP13.76□□□□□ -0.21
LDLR-201ENST00000252444 INPPL1O15357 1258 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 HPCAL1P37235 193 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 COPAP53621 1224 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 KIAA0930Q6ICG6 404 aaPredicted RBP13.76□□□□□ -0.21
LDLR-201ENST00000252444 JADE3Q92613 823 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 KCNK4Q9NYG8 393 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 GOLGA8RI6L899 631 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 MFSD11O43934 449 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 CSHL1Q14406 222 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 LRRC14Q15048 493 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 AGMOQ6ZNB7 445 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 TMEM192Q8IY95 271 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 DCAF4L2Q8NA75 395 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 CEP44Q9C0F1 390 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 TCAF1Q9Y4C2 921 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 IFI35P80217 286 aaPredicted RBP13.76□□□□□ -0.21
LDLR-201ENST00000252444 ZNF844Q08AG5 666 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 SLC9A4Q6AI14 798 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 PGAP3Q96FM1 320 aaPredicted RBP13.76□□□□□ -0.21
LDLR-201ENST00000252444 ADA2Q9NZK5 511 aa13.76□□□□□ -0.21
LDLR-201ENST00000252444 CCT8L1PA6NM43 557 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 CD3EAPO15446 510 aaKnown RBP13.75□□□□□ -0.21
LDLR-201ENST00000252444 CTSAP10619 480 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 LMO2P25791 158 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 CDC16Q13042 620 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 EIF4HQ15056 248 aaKnown RBP13.75□□□□□ -0.21
LDLR-201ENST00000252444 CARD16Q5EG05 197 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 N4BP2L1Q5TBK1 243 aaPredicted RBP13.75□□□□□ -0.21
LDLR-201ENST00000252444 PAGE2Q7Z2X7 111 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 PHYKPLQ8IUZ5 450 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 INPP5DQ92835 1189 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 MSANTD3Q96H12 275 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 TEKT5Q96M29 485 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 TSGA13Q96PP4 275 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 SEMA4AQ9H3S1 761 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 C8orf33Q9H7E9 229 aaPredicted RBP13.75□□□□□ -0.21
LDLR-201ENST00000252444 ZFYVE1Q9HBF4 777 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 NPHS2Q9NP85 383 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 RCCD1A6NED2 376 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 CALB2P22676 271 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 MAGEA9P43362 315 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 GUCY1A3Q02108 690 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 ATP6AP1LQ52LC2 224 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 COLGALT2Q8IYK4 626 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 GBP5Q96PP8 586 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 ACTR8Q9H981 624 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 HECAQ9UBI9 543 aaPredicted RBP13.75□□□□□ -0.21
LDLR-201ENST00000252444 ENOPH1Q9UHY7 261 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 COG5Q9UP83 839 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 GSRP00390 522 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 BMPR1AP36894 532 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 108.6 ms