RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 ARHGEF26Q96DR7 871 aa16.69■□□□□ 0.26
CLN3-255ENST00000637100 CFAP57Q96MR6 1250 aa16.69■□□□□ 0.26
CLN3-255ENST00000637100 OSBPL1AQ9BXW6 950 aa16.69■□□□□ 0.26
CLN3-255ENST00000637100 MAGEH1Q9H213 219 aa16.69■□□□□ 0.26
CLN3-255ENST00000637100 SPASTQ9UBP0 616 aa16.69■□□□□ 0.26
CLN3-255ENST00000637100 SATB2Q9UPW6 733 aa16.69■□□□□ 0.26
CLN3-255ENST00000637100 MFHAS1Q9Y4C4 1052 aa16.69■□□□□ 0.26
CLN3-255ENST00000637100 CYSRT1A8MQ03 144 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 KLK10O43240 276 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 MTIF2P46199 727 aaKnown RBP16.68■□□□□ 0.26
CLN3-255ENST00000637100 PDX1P52945 283 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 PTK2BQ14289 1009 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 CDKN3Q16667 212 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 MYLK3Q32MK0 819 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 VWA3BQ502W6 1294 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 PERM1Q5SV97 790 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 C6orf132Q5T0Z8 1188 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 RBM44Q6ZP01 1051 aaKnown RBP16.68■□□□□ 0.26
CLN3-255ENST00000637100 NOP9Q86U38 636 aaKnown RBP16.68■□□□□ 0.26
CLN3-255ENST00000637100 SLC35F3Q8IY50 421 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 CCDC97Q96F63 343 aaPredicted RBP16.68■□□□□ 0.26
CLN3-255ENST00000637100 ATXN7L3BQ96GX2 97 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 CLPBQ9H078 707 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 DKK3Q9UBP4 350 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 OR12D3Q9UGF7 316 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 GGT7Q9UJ14 662 aa16.68■□□□□ 0.26
CLN3-255ENST00000637100 RP1P56715 2156 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 J3QKU1 62 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 CYP1A1P04798 512 aaPredicted RBP16.67■□□□□ 0.26
CLN3-255ENST00000637100 IGFALSP35858 605 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 BECN1Q14457 450 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 AGERQ15109 404 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 NR0B2Q15466 257 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 DEFB133Q30KQ1 61 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 RAB6CQ53S08 254 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 ARHGAP40Q5TG30 622 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 DRC7Q8IY82 874 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 SDR16C5Q8N3Y7 309 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 LMX1AQ8TE12 382 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 EPS8L1Q8TE68 723 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 NAT6Q93015 286 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 NAF1Q96HR8 494 aaKnown RBP16.67■□□□□ 0.26
CLN3-255ENST00000637100 IL12RB2Q99665 862 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 LRRC61Q9BV99 259 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 STK33Q9BYT3 514 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 SEMA4CQ9C0C4 833 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 RAB6CQ9H0N0 254 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 TCEAL2Q9H3H9 227 aaPredicted RBP16.67■□□□□ 0.26
CLN3-255ENST00000637100 ZDHHC6Q9H6R6 413 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 IPO11Q9UI26 975 aaKnown RBP16.67■□□□□ 0.26
CLN3-255ENST00000637100 ACSL6Q9UKU0 697 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 FHOD1Q9Y613 1164 aa16.67■□□□□ 0.26
CLN3-255ENST00000637100 CPED1A4D0V7 1026 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 FAM72CH0Y354 149 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 YY2O15391 372 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 C6P13671 934 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 UCHL3P15374 230 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 MMP8P22894 467 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 RBMS1P29558 406 aaKnown RBP16.66■□□□□ 0.26
CLN3-255ENST00000637100 GKP32189 559 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 PTPN9P43378 593 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 RPIAP49247 311 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 PEX5P50542 639 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 DNA2P51530 1060 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 SNRPD1P62314 119 aaKnown RBP16.66■□□□□ 0.26
CLN3-255ENST00000637100 CCDC14Q49A88 953 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 INO80DQ53TQ3 878 aaPredicted RBP16.66■□□□□ 0.26
CLN3-255ENST00000637100 C2CD6Q53TS8 623 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 C3orf38Q5JPI3 329 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 FAM72AQ5TYM5 149 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 FAM72DQ6L9T8 149 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 LVRNQ6Q4G3 990 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 MACC1Q6ZN28 852 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 STRADAQ7RTN6 431 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 FAM72BQ86X60 149 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 ZNF677Q86XU0 584 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 PHACTR4Q8IZ21 702 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 RBFAQ8N0V3 343 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 TP53I13Q8NBR0 393 aaPredicted RBP16.66■□□□□ 0.26
CLN3-255ENST00000637100 WDR36Q8NI36 951 aaKnown RBP16.66■□□□□ 0.26
CLN3-255ENST00000637100 HCAR2Q8TDS4 363 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 CASKIN2Q8WXE0 1202 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 LIN37Q96GY3 246 aaPredicted RBP16.66■□□□□ 0.26
CLN3-255ENST00000637100 TUBGCP2Q9BSJ2 902 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 TM6SF2Q9BZW4 377 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 NOL6Q9H6R4 1146 aaKnown RBP16.66■□□□□ 0.26
CLN3-255ENST00000637100 APOBEC3BQ9UH17 382 aaKnown RBP16.66■□□□□ 0.26
CLN3-255ENST00000637100 NOCTQ9UK39 431 aaKnown RBP16.66■□□□□ 0.26
CLN3-255ENST00000637100 ITM2BQ9Y287 266 aa16.66■□□□□ 0.26
CLN3-255ENST00000637100 ZSCAN5CA6NGD5 496 aaPredicted RBP16.65■□□□□ 0.26
CLN3-255ENST00000637100 C2CD4BA6NLJ0 364 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 B8ZZF3 427 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 F8VZ95 297 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 KDELR3O43731 214 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 LRIG2O94898 1065 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 MMEP08473 750 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 ERCC5P28715 1186 aaPredicted RBP16.65■□□□□ 0.26
CLN3-255ENST00000637100 SUOXP51687 545 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 GSCP56915 257 aaPredicted RBP16.65■□□□□ 0.26
CLN3-255ENST00000637100 PTP4A2Q12974 167 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms