RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 IRX4P78413 519 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 TCEAL6Q6IPX3 200 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 NEK5Q6P3R8 708 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 TSEN2Q8NCE0 465 aaKnown RBP20.99■□□□□ 0.95
CLN3-240ENST00000631023 TCEAL3Q969E4 200 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 EXOC2Q96KP1 924 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 ZNF830Q96NB3 372 aaPredicted RBP20.99■□□□□ 0.95
CLN3-240ENST00000631023 PSKH2Q96QS6 385 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 DMXL1Q9Y485 3027 aa20.98■□□□□ 0.95
CLN3-240ENST00000631023 IGHV4-34P06331 123 aa20.98■□□□□ 0.95
CLN3-240ENST00000631023 HSPA9P38646 679 aaKnown RBP20.98■□□□□ 0.95
CLN3-240ENST00000631023 GALNT2Q10471 571 aa20.98■□□□□ 0.95
CLN3-240ENST00000631023 ZNF235Q14590 738 aa20.98■□□□□ 0.95
CLN3-240ENST00000631023 TIGD7Q6NT04 549 aaPredicted RBP20.98■□□□□ 0.95
CLN3-240ENST00000631023 PRPF39Q86UA1 669 aaKnown RBP20.98■□□□□ 0.95
CLN3-240ENST00000631023 ZCCHC9Q8N567 271 aaKnown RBP20.98■□□□□ 0.95
CLN3-240ENST00000631023 RAB7BQ96AH8 199 aa20.98■□□□□ 0.95
CLN3-240ENST00000631023 KLHL32Q96NJ5 620 aa20.98■□□□□ 0.95
CLN3-240ENST00000631023 CABIN1Q9Y6J0 2220 aa20.98■□□□□ 0.95
CLN3-240ENST00000631023 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.97■□□□□ 0.95
CLN3-240ENST00000631023 C16orf96A6NNT2 1141 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 RNF103O00237 685 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 APOL1O14791 398 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 ZRANB2O95218 330 aaKnown RBP eCLIP20.97■□□□□ 0.95
CLN3-240ENST00000631023 SYPP08247 313 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 ADRB3P13945 408 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 NUDT1P36639 197 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 MAPK8P45983 427 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 SLC10A7Q0GE19 358 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 MARC1Q5VT66 337 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 SRLQ86TD4 932 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 RFX6Q8HWS3 928 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 LRRC8AQ8IWT6 810 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 KATNAL2Q8IYT4 538 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 RCOR2Q8IZ40 523 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 TUBGCP5Q96RT8 1024 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 HAUS2Q9NVX0 235 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 ASCC3Q8N3C0 2202 aaKnown RBP20.97■□□□□ 0.95
CLN3-240ENST00000631023 TP53BP1Q12888 1972 aaPredicted RBP20.97■□□□□ 0.95
CLN3-240ENST00000631023 A0A1W2PPC4 97 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 LNP1A1A4G5 178 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 CCNCP24863 283 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 TAS2R38P59533 333 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 GBE1Q04446 702 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 SLC9A4Q6AI14 798 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 TRIM69Q86WT6 500 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 SYCE1Q8N0S2 351 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 NETO1Q8TDF5 533 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 HCAR2Q8TDS4 363 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 ZNF641Q96N77 438 aaPredicted RBP20.97■□□□□ 0.95
CLN3-240ENST00000631023 TSGA13Q96PP4 275 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 CAPN10Q9HC96 672 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 DKK3Q9UBP4 350 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 HEY1Q9Y5J3 304 aa20.97■□□□□ 0.95
CLN3-240ENST00000631023 MACROD2A1Z1Q3 448 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 INSIG1O15503 277 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 LATO43561 262 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 PCDH8O95206 1070 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 PEX11BO96011 259 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 CDKN2BP42772 138 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 MMP13P45452 471 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 SCNN1BP51168 640 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 AFF3P51826 1226 aaKnown RBP20.96■□□□□ 0.95
CLN3-240ENST00000631023 ATXN3P54252 364 aaPredicted RBP20.96■□□□□ 0.95
CLN3-240ENST00000631023 HNRNPDQ14103 355 aaKnown RBP20.96■□□□□ 0.95
CLN3-240ENST00000631023 TFDP2Q14188 446 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 TEAD4Q15561 434 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 TFDP3Q5H9I0 405 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 CFAP58Q5T655 872 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 MFSD7Q6UXD7 560 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 PARS2Q7L3T8 475 aaKnown RBP20.96■□□□□ 0.95
CLN3-240ENST00000631023 EXD1Q8NHP7 514 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 C1orf216Q8TAB5 229 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 RBM41Q96IZ5 413 aaKnown RBP20.96■□□□□ 0.95
CLN3-240ENST00000631023 EDEM2Q9BV94 578 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 TSGA10Q9BZW7 698 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 ATP13A3Q9H7F0 1226 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 DTLQ9NZJ0 730 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 CDV3Q9UKY7 258 aaKnown RBP20.96■□□□□ 0.95
CLN3-240ENST00000631023 ADGRG1Q9Y653 693 aa20.96■□□□□ 0.95
CLN3-240ENST00000631023 PCDH15Q96QU1 1955 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 C10orf142B7Z368 130 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 AP1G1O43747 822 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 RNGTTO60942 597 aaKnown RBP20.95■□□□□ 0.94
CLN3-240ENST00000631023 MAP3K6O95382 1288 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 SERPINA4P29622 427 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 PPP2CBP62714 309 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 PPP2CAP67775 309 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 TAZQ16635 292 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 SPOCD1Q6ZMY3 1216 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 BZW1Q7L1Q6 419 aaKnown RBP20.95■□□□□ 0.94
CLN3-240ENST00000631023 TTC7BQ86TV6 843 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 CCDC50Q8IVM0 306 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 RNF10Q8N5U6 811 aaKnown RBP20.95■□□□□ 0.94
CLN3-240ENST00000631023 PLD5Q8N7P1 536 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 CCNYQ8ND76 341 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 ANP32BQ92688 251 aaKnown RBP20.95■□□□□ 0.94
CLN3-240ENST00000631023 FATE1Q969F0 183 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 HDAC11Q96DB2 347 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 FEM1CQ96JP0 617 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms