RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 PPP2CAP67775 309 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 PUM1Q14671 1186 aaKnown RBP eCLIP17.08■□□□□ 0.32
TRIM28-215ENST00000601150 LBRQ14739 615 aaKnown RBP17.08■□□□□ 0.32
TRIM28-215ENST00000601150 GRM3Q14832 879 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 C11orf63Q6NUN7 778 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 NEK5Q6P3R8 708 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 PRPF39Q86UA1 669 aaKnown RBP17.08■□□□□ 0.32
TRIM28-215ENST00000601150 TSEN2Q8NCE0 465 aaKnown RBP17.08■□□□□ 0.32
TRIM28-215ENST00000601150 ACRBPQ8NEB7 543 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 VOPP1Q96AW1 172 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 KLHL32Q96NJ5 620 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 RNF157Q96PX1 679 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 ORAI3Q9BRQ5 295 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 TM9SF3Q9HD45 589 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 SEPT3Q9UH03 358 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 SLCO1B1Q9Y6L6 691 aa17.08■□□□□ 0.32
TRIM28-215ENST00000601150 C16orf96A6NNT2 1141 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 BTNL10A8MVZ5 291 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 INSIG1O15503 277 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 PSTPIP1O43586 416 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 RNGTTO60942 597 aaKnown RBP17.07■□□□□ 0.32
TRIM28-215ENST00000601150 MAPK8P45983 427 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 RENBPP51606 427 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 GALNT2Q10471 571 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 TEAD4Q15561 434 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 KIAA1328Q86T90 577 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 SRLQ86TD4 932 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 TXLNBQ8N3L3 684 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 PQLC3Q8N755 202 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 TPCN2Q8NHX9 752 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 NSMCE1Q8WV22 266 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 RAB7BQ96AH8 199 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 PSKH2Q96QS6 385 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 RTKNQ9BST9 563 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 GTPBP2Q9BX10 602 aaKnown RBP17.07■□□□□ 0.32
TRIM28-215ENST00000601150 ZDHHC5Q9C0B5 715 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 EBF2Q9HAK2 575 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 SALL4Q9UJQ4 1053 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 TMEM131Q92545 1883 aa17.07■□□□□ 0.32
TRIM28-215ENST00000601150 C3orf70A6NLC5 250 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-215ENST00000601150 C4orf47A7E2U8 309 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 CDX4O14627 284 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-215ENST00000601150 PJA2O43164 708 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 AP1G1O43747 822 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 PCDH8O95206 1070 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 PEX11BO96011 259 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 MAT2AP31153 395 aaKnown RBP17.06■□□□□ 0.32
TRIM28-215ENST00000601150 HSPA9P38646 679 aaKnown RBP17.06■□□□□ 0.32
TRIM28-215ENST00000601150 GARSP41250 739 aaKnown RBP17.06■□□□□ 0.32
TRIM28-215ENST00000601150 RGRP47804 291 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 GRIA4P48058 902 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 RACK1P63244 317 aaKnown RBP17.06■□□□□ 0.32
TRIM28-215ENST00000601150 NSUN2Q08J23 767 aaKnown RBP eCLIP17.06■□□□□ 0.32
TRIM28-215ENST00000601150 SLC10A7Q0GE19 358 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 GRIK2Q13002 908 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 ZNF235Q14590 738 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 DAAM2Q86T65 1068 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 BBS5Q8N3I7 341 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-215ENST00000601150 RNF25Q96BH1 459 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-215ENST00000601150 SLC6A18Q96N87 628 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 TUBGCP5Q96RT8 1024 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 MAK16Q9BXY0 300 aaKnown RBP17.06■□□□□ 0.32
TRIM28-215ENST00000601150 GOLPH3Q9H4A6 298 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 DKK3Q9UBP4 350 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 DMTF1Q9Y222 760 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 FADS3Q9Y5Q0 445 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 TRPM6Q9BX84 2022 aa17.06■□□□□ 0.32
TRIM28-215ENST00000601150 A0A1B0GVT2 93 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 A0A1W2PQU0 124 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 PIGNO95427 931 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 MX2P20592 715 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 ABL2P42684 1182 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 CSNK1EP49674 416 aaKnown RBP17.05■□□□□ 0.32
TRIM28-215ENST00000601150 NAP1L1P55209 391 aaKnown RBP17.05■□□□□ 0.32
TRIM28-215ENST00000601150 GBE1Q04446 702 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 IFI16Q16666 785 aaKnown RBP17.05■□□□□ 0.32
TRIM28-215ENST00000601150 SETMARQ53H47 684 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-215ENST00000601150 MARC1Q5VT66 337 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 TIGD7Q6NT04 549 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-215ENST00000601150 ADAT2Q7Z6V5 191 aaKnown RBP17.05■□□□□ 0.32
TRIM28-215ENST00000601150 HORMAD1Q86X24 394 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 HCAR2Q8TDS4 363 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 SERAC1Q96JX3 654 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 ZNF641Q96N77 438 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-215ENST00000601150 TSGA13Q96PP4 275 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 LACRTQ9GZZ8 138 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 SUV39H2Q9H5I1 410 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 ATP13A3Q9H7F0 1226 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 AASDHPPTQ9NRN7 309 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.05■□□□□ 0.32
TRIM28-215ENST00000601150 DUSP10Q9Y6W6 482 aa17.05■□□□□ 0.32
TRIM28-215ENST00000601150 LAMA1P25391 3075 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 APOL1O14791 398 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 MUSKO15146 869 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 TSPAN6O43657 245 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 MAP3K6O95382 1288 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 ZFXP17010 805 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-215ENST00000601150 SERPINA4P29622 427 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 AP1S1P61966 158 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms