RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TUBGCP5Q96RT8 1024 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 GOLPH3Q9H4A6 298 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 HAUS2Q9NVX0 235 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 A0A1W2PPC4 97 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 C16orf96A6NNT2 1141 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 BCAT2O15382 392 aaPredicted RBP15.22■□□□□ 0.03
UPF1-202ENST00000594243 UGT2B4P06133 528 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 IGHV4-34P06331 123 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 ADRB3P13945 408 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 NUDT1P36639 197 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 MAPK8P45983 427 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 TAS2R38P59533 333 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 HNRNPDQ14103 355 aaKnown RBP15.22■□□□□ 0.03
UPF1-202ENST00000594243 TFDP2Q14188 446 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 ZNF235Q14590 738 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 TCEAL6Q6IPX3 200 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 MFSD7Q6UXD7 560 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 BZW1Q7L1Q6 419 aaKnown RBP15.22■□□□□ 0.03
UPF1-202ENST00000594243 SRLQ86TD4 932 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 TTC7BQ86TV6 843 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 RFX6Q8HWS3 928 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 RNF10Q8N5U6 811 aaKnown RBP15.22■□□□□ 0.03
UPF1-202ENST00000594243 EXD1Q8NHP7 514 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 ANP32BQ92688 251 aaKnown RBP15.22■□□□□ 0.03
UPF1-202ENST00000594243 TCEAL3Q969E4 200 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 FATE1Q969F0 183 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 RBM41Q96IZ5 413 aaKnown RBP15.22■□□□□ 0.03
UPF1-202ENST00000594243 ZNF641Q96N77 438 aaPredicted RBP15.22■□□□□ 0.03
UPF1-202ENST00000594243 TSGA13Q96PP4 275 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 TSGA10Q9BZW7 698 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 SUV39H2Q9H5I1 410 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 PCDHA3Q9Y5H8 950 aa15.22■□□□□ 0.03
UPF1-202ENST00000594243 CEP192Q8TEP8 1941 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.21■□□□□ 0.03
UPF1-202ENST00000594243 MACROD2A1Z1Q3 448 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 CCDC66A2RUB6 948 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 C10orf142B7Z368 130 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 MATN3O15232 486 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 INSIG1O15503 277 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 AP1G1O43747 822 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 KRT86O43790 486 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 PCDH8O95206 1070 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 PEX11BO96011 259 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 SYPP08247 313 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 CTNNA1P35221 906 aaKnown RBP15.21■□□□□ 0.03
UPF1-202ENST00000594243 CDKN2BP42772 138 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 MMP13P45452 471 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 NR2C2P49116 596 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 SCNN1BP51168 640 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 AFF3P51826 1226 aaKnown RBP15.21■□□□□ 0.03
UPF1-202ENST00000594243 GBE1Q04446 702 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 SLC10A2Q12908 348 aaPredicted RBP15.21■□□□□ 0.03
UPF1-202ENST00000594243 TFDP3Q5H9I0 405 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 CFAP58Q5T655 872 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 SPOCD1Q6ZMY3 1216 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 PARS2Q7L3T8 475 aaKnown RBP15.21■□□□□ 0.03
UPF1-202ENST00000594243 ZSCAN30Q86W11 494 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 TRIM69Q86WT6 500 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 ABCA7Q8IZY2 2146 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 ZCCHC9Q8N567 271 aaKnown RBP15.21■□□□□ 0.03
UPF1-202ENST00000594243 PLD5Q8N7P1 536 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 CCNYQ8ND76 341 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 C1orf216Q8TAB5 229 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 NETO1Q8TDF5 533 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 VOPP1Q96AW1 172 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 HDAC11Q96DB2 347 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 FEM1CQ96JP0 617 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 ATP13A3Q9H7F0 1226 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 CAPN10Q9HC96 672 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 DTLQ9NZJ0 730 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 DKK3Q9UBP4 350 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 AMFRQ9UKV5 643 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 DMTF1Q9Y222 760 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 HEY1Q9Y5J3 304 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 ADGRG1Q9Y653 693 aa15.21■□□□□ 0.03
UPF1-202ENST00000594243 TNRC6BQ9UPQ9 1833 aaKnown RBP15.21■□□□□ 0.03
UPF1-202ENST00000594243 OTOGLQ3ZCN5 2332 aa15.21■□□□□ 0.02
UPF1-202ENST00000594243 DCHS1Q96JQ0 3298 aa15.21■□□□□ 0.02
UPF1-202ENST00000594243 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.2■□□□□ 0.02
UPF1-202ENST00000594243 LNP1A1A4G5 178 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 LATO43561 262 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 TSPAN6O43657 245 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 RNGTTO60942 597 aaKnown RBP15.2■□□□□ 0.02
UPF1-202ENST00000594243 CTNNA2P26232 953 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 SERPINA4P29622 427 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 CETN2P41208 172 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 RGRP47804 291 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 SUOXP51687 545 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 LIMK1P53667 647 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 ATXN3P54252 364 aaPredicted RBP15.2■□□□□ 0.02
UPF1-202ENST00000594243 COPS2P61201 443 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 AP1S1P61966 158 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 RACK1P63244 317 aaKnown RBP15.2■□□□□ 0.02
UPF1-202ENST00000594243 BCL2L1Q07817 233 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 TEAD4Q15561 434 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 TAZQ16635 292 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 SETMARQ53H47 684 aaPredicted RBP15.2■□□□□ 0.02
UPF1-202ENST00000594243 RALGPS1Q5JS13 557 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 CCDC50Q8IVM0 306 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 TEX26Q8N6G2 289 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms