RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 GARSP41250 739 aaKnown RBP12.06□□□□□ -0.48
LIG3-213ENST00000590630 MAPK8P45983 427 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TAS2R38P59533 333 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 ZNF235Q14590 738 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 LBRQ14739 615 aaKnown RBP12.06□□□□□ -0.48
LIG3-213ENST00000590630 AASDHQ4L235 1098 aaPredicted RBP12.06□□□□□ -0.48
LIG3-213ENST00000590630 SLC9A4Q6AI14 798 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TBC1D3GQ6DHY5 549 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TBC1D3CQ6IPX1 549 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TCEAL6Q6IPX3 200 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TIGD7Q6NT04 549 aaPredicted RBP12.06□□□□□ -0.48
LIG3-213ENST00000590630 NEK5Q6P3R8 708 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 FBXL19Q6PCT2 694 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 GDPD4Q6W3E5 623 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TRIM69Q86WT6 500 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 KATNAL2Q8IYT4 538 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TBC1D3Q8IZP1 549 aaPredicted RBP12.06□□□□□ -0.48
LIG3-213ENST00000590630 BBS5Q8N3I7 341 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TSEN2Q8NCE0 465 aaKnown RBP12.06□□□□□ -0.48
LIG3-213ENST00000590630 C1orf216Q8TAB5 229 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 KIAA1524Q8TCG1 905 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TCEAL3Q969E4 200 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 FATE1Q969F0 183 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 RAB7BQ96AH8 199 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 VOPP1Q96AW1 172 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 EXOC2Q96KP1 924 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 ZNF830Q96NB3 372 aaPredicted RBP12.06□□□□□ -0.48
LIG3-213ENST00000590630 TUBGCP5Q96RT8 1024 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 MAK16Q9BXY0 300 aaKnown RBP12.06□□□□□ -0.48
LIG3-213ENST00000590630 MIR1-1HGQ9H1L0 117 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 CAPN10Q9HC96 672 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 DKK3Q9UBP4 350 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 SLC6A14Q9UN76 642 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 A0A1W2PPC4 97 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 C16orf96A6NNT2 1141 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 RNF103O00237 685 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 APOL1O14791 398 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 AP1G1O43747 822 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 ZRANB2O95218 330 aaKnown RBP eCLIP12.05□□□□□ -0.48
LIG3-213ENST00000590630 SDHBP21912 280 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 GKP32189 559 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 CTNNA1P35221 906 aaKnown RBP12.05□□□□□ -0.48
LIG3-213ENST00000590630 CDKN2BP42772 138 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 AFF3P51826 1226 aaKnown RBP12.05□□□□□ -0.48
LIG3-213ENST00000590630 IRX4P78413 519 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 GBE1Q04446 702 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 SLC10A7Q0GE19 358 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 HNRNPDQ14103 355 aaKnown RBP12.05□□□□□ -0.48
LIG3-213ENST00000590630 TAZQ16635 292 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 TFDP3Q5H9I0 405 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 MARC1Q5VT66 337 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 PARS2Q7L3T8 475 aaKnown RBP12.05□□□□□ -0.48
LIG3-213ENST00000590630 LRRC8AQ8IWT6 810 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 RCOR2Q8IZ40 523 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 ZCCHC9Q8N567 271 aaKnown RBP12.05□□□□□ -0.48
LIG3-213ENST00000590630 PLD5Q8N7P1 536 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 LRRC57Q8N9N7 239 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 EXD1Q8NHP7 514 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 NETO1Q8TDF5 533 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 HCAR2Q8TDS4 363 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 RNF25Q96BH1 459 aaPredicted RBP12.05□□□□□ -0.48
LIG3-213ENST00000590630 HDAC11Q96DB2 347 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 RBM41Q96IZ5 413 aaKnown RBP12.05□□□□□ -0.48
LIG3-213ENST00000590630 ZNF641Q96N77 438 aaPredicted RBP12.05□□□□□ -0.48
LIG3-213ENST00000590630 KLHL32Q96NJ5 620 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 TSGA13Q96PP4 275 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 TSGA10Q9BZW7 698 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 ATP13A3Q9H7F0 1226 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 HAUS2Q9NVX0 235 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 DTLQ9NZJ0 730 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 ADGRG1Q9Y653 693 aa12.05□□□□□ -0.48
LIG3-213ENST00000590630 ASCC3Q8N3C0 2202 aaKnown RBP12.05□□□□□ -0.48
LIG3-213ENST00000590630 CNOT1A5YKK6 2376 aaKnown RBP12.04□□□□□ -0.48
LIG3-213ENST00000590630 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.04□□□□□ -0.48
LIG3-213ENST00000590630 MACROD2A1Z1Q3 448 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 CCDC66A2RUB6 948 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 GRID2IPA4D2P6 1211 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 SYPP08247 313 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 CCNCP24863 283 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 SERPINA4P29622 427 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 MMP13P45452 471 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 RGRP47804 291 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 SUOXP51687 545 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 LIMK1P53667 647 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 AP1S1P61966 158 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 PPP2CBP62714 309 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 RACK1P63244 317 aaKnown RBP12.04□□□□□ -0.48
LIG3-213ENST00000590630 PPP2CAP67775 309 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 TFDP2Q14188 446 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 SETMARQ53H47 684 aaPredicted RBP12.04□□□□□ -0.48
LIG3-213ENST00000590630 RALGPS1Q5JS13 557 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 BRAT1Q6PJG6 821 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 MFSD7Q6UXD7 560 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 SPOCD1Q6ZMY3 1216 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 SRLQ86TD4 932 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 PRPF39Q86UA1 669 aaKnown RBP12.04□□□□□ -0.48
LIG3-213ENST00000590630 ZSCAN30Q86W11 494 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 RFX6Q8HWS3 928 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 SYCE1Q8N0S2 351 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 RNF10Q8N5U6 811 aaKnown RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms