RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 FSTL4Q6MZW2 842 aa16.34■□□□□ 0.21
SS18-226ENST00000585241 PPP1R21Q6ZMI0 780 aa16.34■□□□□ 0.21
SS18-226ENST00000585241 SRLQ86TD4 932 aa16.34■□□□□ 0.21
SS18-226ENST00000585241 KCNV2Q8TDN2 545 aa16.34■□□□□ 0.21
SS18-226ENST00000585241 AENQ8WTP8 325 aaKnown RBP16.34■□□□□ 0.21
SS18-226ENST00000585241 EXOC2Q96KP1 924 aa16.34■□□□□ 0.21
SS18-226ENST00000585241 MRGPRX2Q96LB1 330 aa16.34■□□□□ 0.21
SS18-226ENST00000585241 FMO2Q99518 471 aa16.34■□□□□ 0.21
SS18-226ENST00000585241 TM6SF2Q9BZW4 377 aa16.34■□□□□ 0.21
SS18-226ENST00000585241 TMEM245Q9H330 911 aa16.34■□□□□ 0.21
SS18-226ENST00000585241 XAB2Q9HCS7 855 aaKnown RBP16.34■□□□□ 0.21
SS18-226ENST00000585241 SCUBE2Q9NQ36 999 aa16.34■□□□□ 0.21
SS18-226ENST00000585241 MTRF1LQ9UGC7 380 aaKnown RBP16.34■□□□□ 0.21
SS18-226ENST00000585241 PLA2G4CQ9UP65 541 aa16.34■□□□□ 0.21
SS18-226ENST00000585241 SLC8A2Q9UPR5 921 aa16.34■□□□□ 0.21
SS18-226ENST00000585241 SORCS3Q9UPU3 1222 aa16.34■□□□□ 0.21
SS18-226ENST00000585241 LOC285095A0A1B0GVY8 99 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 E7ESA3 106 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 GJB3O75712 270 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 EPOP01588 193 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 H2AFXP16104 143 aaPredicted RBP16.33■□□□□ 0.2
SS18-226ENST00000585241 SCNN1BP51168 640 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 WNT3AP56704 352 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 SARNPP82979 210 aaKnown RBP16.33■□□□□ 0.2
SS18-226ENST00000585241 SLC44A4Q53GD3 710 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 CARD16Q5EG05 197 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 ATXN7L2Q5T6C5 722 aaPredicted RBP16.33■□□□□ 0.2
SS18-226ENST00000585241 LRRC8BQ6P9F7 803 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 EMBQ6PCB8 327 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 RANBP10Q6VN20 620 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 LINC00523Q86TU6 105 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 CAND1Q86VP6 1230 aaKnown RBP16.33■□□□□ 0.2
SS18-226ENST00000585241 GSPT2Q8IYD1 628 aaKnown RBP16.33■□□□□ 0.2
SS18-226ENST00000585241 OR2A12Q8NGT7 310 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 FEM1CQ96JP0 617 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 SERPINB12Q96P63 405 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 TUBGCP5Q96RT8 1024 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 TRIB3Q96RU7 358 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 TDRD1Q9BXT4 1180 aaKnown RBP16.33■□□□□ 0.2
SS18-226ENST00000585241 TSPYL1Q9H0U9 437 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 ARNT2Q9HBZ2 717 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 CASS4Q9NQ75 786 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 UNC80Q8N2C7 3258 aa16.33■□□□□ 0.2
SS18-226ENST00000585241 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.32■□□□□ 0.2
SS18-226ENST00000585241 TTC24A2A3L6 582 aaPredicted RBP16.32■□□□□ 0.2
SS18-226ENST00000585241 TTC34A8MYJ7 566 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 EIF3HO15372 352 aaKnown RBP eCLIP16.32■□□□□ 0.2
SS18-226ENST00000585241 LMAN1P49257 510 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 GRM3Q14832 879 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 PON2Q15165 354 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 MLF2Q15773 248 aaPredicted RBP16.32■□□□□ 0.2
SS18-226ENST00000585241 MYLK3Q32MK0 819 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 HNRNPA1L2Q32P51 320 aaKnown RBP16.32■□□□□ 0.2
SS18-226ENST00000585241 EGFLAMQ63HQ2 1017 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 CEP128Q6ZU80 1094 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 Q6ZVU0 165 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 RELL1Q8IUW5 271 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 IPMKQ8NFU5 416 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 HNRNPLLQ8WVV9 542 aaKnown RBP16.32■□□□□ 0.2
SS18-226ENST00000585241 SPOCK2Q92563 424 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 PTPRN2Q92932 1015 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 CAVIN3Q969G5 261 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 ASB2Q96Q27 587 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 TBL1YQ9BQ87 522 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 TXLNGYQ9BZA5 131 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 CPEB1Q9BZB8 566 aaKnown RBP16.32■□□□□ 0.2
SS18-226ENST00000585241 TNKS2Q9H2K2 1166 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 UBP1Q9NZI7 540 aa16.32■□□□□ 0.2
SS18-226ENST00000585241 EVLQ9UI08 416 aaPredicted RBP16.32■□□□□ 0.2
SS18-226ENST00000585241 ARIH1Q9Y4X5 557 aaPredicted RBP16.32■□□□□ 0.2
SS18-226ENST00000585241 EDDM13A0A1B0GTR0 161 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 AP3B1O00203 1094 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 MAN2B1O00754 1011 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 TRAFD1O14545 582 aaPredicted RBP16.31■□□□□ 0.2
SS18-226ENST00000585241 HTRA2O43464 458 aaPredicted RBP16.31■□□□□ 0.2
SS18-226ENST00000585241 FZD6O60353 706 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 SOCS5O75159 536 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 PMPCBO75439 489 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 POP4O95707 220 aaKnown RBP16.31■□□□□ 0.2
SS18-226ENST00000585241 EGFP01133 1207 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 GRIA1P42261 906 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 IL12RB1P42701 662 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 CCNHP51946 323 aaPredicted RBP16.31■□□□□ 0.2
SS18-226ENST00000585241 ARL4CP56559 192 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 PRKCQQ04759 706 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 CDK18Q07002 472 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 GRSF1Q12849 480 aaKnown RBP eCLIP16.31■□□□□ 0.2
SS18-226ENST00000585241 TRAF2Q12933 501 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 HIF1AQ16665 826 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 MAP9Q49MG5 647 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 ACCSLQ4AC99 568 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 FNDC3BQ53EP0 1204 aaKnown RBP16.31■□□□□ 0.2
SS18-226ENST00000585241 SYCP2LQ5T4T6 812 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 DENND5AQ6IQ26 1287 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 DPY19L3Q6ZPD9 716 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 TPRG1Q6ZUI0 275 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 RNF135Q8IUD6 432 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.31■□□□□ 0.2
SS18-226ENST00000585241 FAM3CQ92520 227 aa16.31■□□□□ 0.2
SS18-226ENST00000585241 FICDQ9BVA6 458 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms