RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 SPATA22Q8NHS9 363 aa15.46■□□□□ 0.07
SS18-206ENST00000577572 MRGPRX3Q96LB0 322 aa15.46■□□□□ 0.07
SS18-206ENST00000577572 MRGPRX2Q96LB1 330 aa15.46■□□□□ 0.07
SS18-206ENST00000577572 IL22Q9GZX6 179 aa15.46■□□□□ 0.07
SS18-206ENST00000577572 NOD2Q9HC29 1040 aa15.46■□□□□ 0.07
SS18-206ENST00000577572 LIMD1Q9UGP4 676 aa15.46■□□□□ 0.07
SS18-206ENST00000577572 TBC1D3BA6NDS4 549 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 ZNF821O75541 412 aaPredicted RBP15.45■□□□□ 0.06
SS18-206ENST00000577572 KAT7O95251 611 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 POP4O95707 220 aaKnown RBP15.45■□□□□ 0.06
SS18-206ENST00000577572 TTC4O95801 387 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 MT-CYBP00156 380 aaPredicted RBP15.45■□□□□ 0.06
SS18-206ENST00000577572 FGF1P05230 155 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 ABHD2P08910 425 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 RECQLP46063 649 aaPredicted RBP15.45■□□□□ 0.06
SS18-206ENST00000577572 SLC6A11P48066 632 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 MAXP61244 160 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 CDK18Q07002 472 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 PDIA2Q13087 525 aaKnown RBP15.45■□□□□ 0.06
SS18-206ENST00000577572 TDGQ13569 410 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 DLG2Q15700 870 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 CARD16Q5EG05 197 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 ALS2CLQ60I27 953 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 LEKR1Q6ZMV7 388 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 CYS1Q717R9 158 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 TAB3Q8N5C8 712 aaPredicted RBP15.45■□□□□ 0.06
SS18-206ENST00000577572 IPMKQ8NFU5 416 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 HCAR2Q8TDS4 363 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 PYROXD1Q8WU10 500 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 PPM1EQ8WY54 764 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 IFT43Q96FT9 208 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 ZNF641Q96N77 438 aaPredicted RBP15.45■□□□□ 0.06
SS18-206ENST00000577572 P2RY13Q9BPV8 354 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 ADGRE3Q9BY15 652 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 CIPCQ9C0C6 399 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 ATP13A3Q9H7F0 1226 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 SAYSD1Q9NPB0 183 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 FCF1Q9Y324 198 aaKnown RBP15.45■□□□□ 0.06
SS18-206ENST00000577572 TEX264Q9Y6I9 313 aa15.45■□□□□ 0.06
SS18-206ENST00000577572 GOLGA8MH3BSY2 632 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 SMAD6O43541 496 aaKnown RBP15.44■□□□□ 0.06
SS18-206ENST00000577572 PMPCBO75439 489 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 NDST3O95803 873 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 SRFP11831 508 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 HNRNPLP14866 589 aaKnown RBP eCLIP15.44■□□□□ 0.061e-9■■■■■ 30.1
SS18-206ENST00000577572 CTSOP43234 321 aaPredicted RBP15.44■□□□□ 0.06
SS18-206ENST00000577572 EIF3BP55884 814 aaKnown RBP15.44■□□□□ 0.06
SS18-206ENST00000577572 FRG1Q14331 258 aaKnown RBP15.44■□□□□ 0.06
SS18-206ENST00000577572 CASP8Q14790 479 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 PTPRNQ16849 979 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 MYLK3Q32MK0 819 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 DGKKQ5KSL6 1271 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 FNBP1LQ5T0N5 605 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 ZNF449Q6P9G9 518 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 CROCCP2Q86T23 111 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 CCDC25Q86WR0 208 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 ADHFE1Q8IWW8 467 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 DNAAF3Q8N9W5 541 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 MAFAQ8NHW3 353 aaPredicted RBP15.44■□□□□ 0.06
SS18-206ENST00000577572 FRS2Q8WU20 508 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 PEX13Q92968 403 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 SIGLEC10Q96LC7 697 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 RANBP9Q96S59 729 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 EBNA1BP2Q99848 306 aaKnown RBP15.44■□□□□ 0.06
SS18-206ENST00000577572 C19orf43Q9BQ61 176 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 TDRD1Q9BXT4 1180 aaKnown RBP15.44■□□□□ 0.06
SS18-206ENST00000577572 OSBPL1AQ9BXW6 950 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 FUT8Q9BYC5 575 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 ACBD3Q9H3P7 528 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 PPCSQ9HAB8 311 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 MRM3Q9HC36 420 aaKnown RBP15.44■□□□□ 0.06
SS18-206ENST00000577572 SUN2Q9UH99 717 aa15.44■□□□□ 0.06
SS18-206ENST00000577572 PRRT4C9JH25 899 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 SPECC1L-ADORA2AF8WAN1 911 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 K7ERQ8 282 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 TRIM24O15164 1050 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 HTRA2O43464 458 aaPredicted RBP15.43■□□□□ 0.06
SS18-206ENST00000577572 FZD6O60353 706 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 NUDT17P0C025 328 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 DRD1P21728 446 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 SERPINA4P29622 427 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 CTHP32929 405 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 PHBP35232 272 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 RGRP47804 291 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 BCL2L1Q07817 233 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 ENPP2Q13822 863 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 SLC1A5Q15758 541 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 KCTD19Q17RG1 926 aaPredicted RBP15.43■□□□□ 0.06
SS18-206ENST00000577572 BBS9Q3SYG4 887 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 DENND5AQ6IQ26 1287 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 NLRP9Q7RTR0 991 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 ZBED8Q8IZ13 594 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 OR52K1Q8NGK4 314 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 CHFRQ96EP1 664 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 MYO19Q96H55 970 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 RPL10LQ96L21 214 aaKnown RBP15.43■□□□□ 0.06
SS18-206ENST00000577572 TRIB3Q96RU7 358 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 FICDQ9BVA6 458 aa15.43■□□□□ 0.06
SS18-206ENST00000577572 CDC42EP4Q9H3Q1 356 aaKnown RBP15.43■□□□□ 0.06
SS18-206ENST00000577572 THAP10Q9P2Z0 257 aaPredicted RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms