RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SLC45A3Q96JT2 553 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 HSFY1Q96LI6 401 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 MLPHQ9BV36 600 aaPredicted RBP14.64□□□□□ -0.07
VPS35-210ENST00000568784 ZBTB26Q9HCK0 441 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 RBM22Q9NW64 420 aaKnown RBP eCLIP14.64□□□□□ -0.07
VPS35-210ENST00000568784 VTI1BQ9UEU0 232 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 AURKAO14965 403 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 INPP4BO15327 924 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 TFPTP0C1Z6 253 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 CD151P48509 253 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 ZNF280AP59817 542 aaPredicted RBP14.64□□□□□ -0.07
VPS35-210ENST00000568784 TBC1D25Q3MII6 688 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 SCIMPQ6UWF3 145 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 CANT1Q8WVQ1 401 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 DLG3Q92796 817 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 TMEM165Q9HC07 324 aa14.64□□□□□ -0.07
VPS35-210ENST00000568784 GRM5P41594 1212 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 CSE1LP55060 971 aaKnown RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 TRIM25Q14258 630 aaKnown RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 KYAT1Q16773 422 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 RBM20Q5T481 1227 aaKnown RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 CNSTQ6PJW8 725 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 UNC93AQ86WB7 457 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 SPPL2CQ8IUH8 684 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 OR52K2Q8NGK3 314 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 IGSF9Q9P2J2 1179 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 SMIM28A0A1B0GU29 152 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 NCF1BA6NI72 391 aaPredicted RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 NCF1CA8MVU1 366 aaPredicted RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 LRIG2O94898 1065 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 GFAPP14136 432 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 NCF1P14598 390 aaPredicted RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 NPY2RP49146 381 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 GLUD2P49448 558 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 KPNA2P52292 529 aaKnown RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 C16orf87Q6PH81 154 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 CHST15Q7LFX5 561 aaPredicted RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 AHI1Q8N157 1196 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 CBR4Q8N4T8 237 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 TXNDC5Q8NBS9 432 aaKnown RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 KBTBD7Q8WVZ9 684 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 TUBGCP3Q96CW5 907 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 RIMS3Q9UJD0 308 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 FBXO5Q9UKT4 447 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 SLCO1B7G3V0H7 640 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 USP2O75604 605 aaPredicted RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 TOMM70O94826 608 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 SLC35E2BP0CK96 405 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 PAMP19021 973 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 SLC5A2P31639 672 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 LPIN1Q14693 890 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 MAPRE2Q15555 327 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 TFAP2DQ7Z6R9 452 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 OR6J1Q8NGC5 347 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 SCN1AP35498 2009 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 UBA6A0AVT1 1052 aaPredicted RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 BCAS2O75934 225 aaPredicted RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 BAIAP3O94812 1187 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 NSUN2Q08J23 767 aaKnown RBP eCLIP14.63□□□□□ -0.07
VPS35-210ENST00000568784 PLCL1Q15111 1095 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 GPR107Q5VW38 600 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 REP15Q6BDI9 236 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 SOX17Q9H6I2 414 aaPredicted RBP14.63□□□□□ -0.07
VPS35-210ENST00000568784 VRTNQ9H8Y1 702 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 SPAG4Q9NPE6 437 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 BTRCQ9Y297 605 aa14.63□□□□□ -0.07
VPS35-210ENST00000568784 TTC24A2A3L6 582 aaPredicted RBP14.62□□□□□ -0.07
VPS35-210ENST00000568784 C7orf72A4D263 438 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 CD4P01730 458 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 IL10P22301 178 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 CES1P23141 567 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 YAP1P46937 504 aaKnown RBP14.62□□□□□ -0.07
VPS35-210ENST00000568784 ATP1A4Q13733 1029 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 DCAF4L1Q3SXM0 396 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 ZIK1Q3SY52 487 aaPredicted RBP14.62□□□□□ -0.07
VPS35-210ENST00000568784 NEPROQ6NW34 567 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 CUZD1Q86UP6 607 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 OSTM1Q86WC4 334 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 DNAJB14Q8TBM8 379 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 VPS50Q96JG6 964 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 TBL1YQ9BQ87 522 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 EIF2B3Q9NR50 452 aaKnown RBP14.62□□□□□ -0.07
VPS35-210ENST00000568784 WARS2Q9UGM6 360 aaKnown RBP14.62□□□□□ -0.07
VPS35-210ENST00000568784 COL4A5P29400 1685 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 PGK1P00558 417 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 SNRPB2P08579 225 aaKnown RBP14.62□□□□□ -0.07
VPS35-210ENST00000568784 CD68P34810 354 aaPredicted RBP14.62□□□□□ -0.07
VPS35-210ENST00000568784 SLC1A2P43004 574 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 PSMD7P51665 324 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 MYBPC3Q14896 1274 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 VPS26BQ4G0F5 336 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 GBA3Q9H227 469 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 GPRC5DQ9NZD1 345 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 PTGDR2Q9Y5Y4 395 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 ASB14A6NK59 587 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 DENRO43583 198 aaKnown RBP14.62□□□□□ -0.07
VPS35-210ENST00000568784 SLC25A27O95847 323 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 PIRTP0C851 137 aa14.62□□□□□ -0.07
VPS35-210ENST00000568784 CPB1P15086 417 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms