RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 GATAD2AQ86YP4 633 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 ATP11CQ8NB49 1132 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 FNIP1Q8TF40 1166 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 FRS2Q8WU20 508 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 PTPRN2Q92932 1015 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 ARHGEF2Q92974 986 aaKnown RBP14.15□□□□□ -0.14
CLN3-235ENST00000568497 CNDP2Q96KP4 475 aaKnown RBP14.15□□□□□ -0.14
CLN3-235ENST00000568497 FAM129BQ96TA1 746 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 SLC39A8Q9C0K1 460 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 TMEM248Q9NWD8 314 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 PPARGC1AQ9UBK2 798 aaKnown RBP14.15□□□□□ -0.14
CLN3-235ENST00000568497 IP6K2Q9UHH9 426 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 SARDHQ9UL12 918 aa14.15□□□□□ -0.14
CLN3-235ENST00000568497 NYNRINQ9P2P1 1898 aaKnown RBP14.14□□□□□ -0.15
CLN3-235ENST00000568497 TTC24A2A3L6 582 aaPredicted RBP14.14□□□□□ -0.15
CLN3-235ENST00000568497 RASA4BC9J798 803 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 J3KR12 359 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 RASA4O43374 803 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 ERCC2P18074 760 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 NOP2P46087 812 aaKnown RBP14.14□□□□□ -0.15
CLN3-235ENST00000568497 GRIA4P48058 902 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 PLK1P53350 603 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 UCNP55089 124 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 NRG1Q02297 640 aaPredicted RBP14.14□□□□□ -0.15
CLN3-235ENST00000568497 CAMK2GQ13555 558 aaPredicted RBP14.14□□□□□ -0.15
CLN3-235ENST00000568497 HNRNPA1L2Q32P51 320 aaKnown RBP14.14□□□□□ -0.15
CLN3-235ENST00000568497 ATXN7L2Q5T6C5 722 aaPredicted RBP14.14□□□□□ -0.15
CLN3-235ENST00000568497 RFX8Q6ZV50 586 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 RTL3Q8N8U3 475 aaKnown RBP14.14□□□□□ -0.15
CLN3-235ENST00000568497 ZNF248Q8NDW4 579 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 OR2T3Q8NH03 318 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 EXOC2Q96KP1 924 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 PANX2Q96RD6 677 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 EPAS1Q99814 870 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 TM6SF2Q9BZW4 377 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 LACRTQ9GZZ8 138 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 PCDH18Q9HCL0 1135 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 TM9SF3Q9HD45 589 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 SLC25A13Q9UJS0 675 aa14.14□□□□□ -0.15
CLN3-235ENST00000568497 HEMK1Q9Y5R4 338 aaPredicted RBP14.14□□□□□ -0.15
CLN3-235ENST00000568497 EPN1Q9Y6I3 576 aaPredicted RBP14.14□□□□□ -0.15
CLN3-235ENST00000568497 ILVBLA1L0T0 632 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 FAM47DPA6NHR8 397 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 DFFAO00273 331 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 DAPK3O43293 454 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 RAMP2O60895 175 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 ZNF821O75541 412 aaPredicted RBP14.13□□□□□ -0.15
CLN3-235ENST00000568497 ASLP04424 464 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 CTSLP07711 333 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 C1SP09871 688 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 CDC25BP30305 580 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 ETFBP38117 255 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 MARCKSL1P49006 195 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 CDH6P55285 790 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 PCBP4P57723 403 aaKnown RBP14.13□□□□□ -0.15
CLN3-235ENST00000568497 PIGHQ14442 188 aaPredicted RBP14.13□□□□□ -0.15
CLN3-235ENST00000568497 KRT81Q14533 505 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 POLD3Q15054 466 aaPredicted RBP14.13□□□□□ -0.15
CLN3-235ENST00000568497 ARHGAP12Q8IWW6 846 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 SH2D3CQ8N5H7 860 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 GRIN3AQ8TCU5 1115 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 GANCQ8TET4 914 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 RAPGEF5Q92565 580 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 MED8Q96G25 268 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 BAG1Q99933 345 aaPredicted RBP14.13□□□□□ -0.15
CLN3-235ENST00000568497 IRX2Q9BZI1 471 aaPredicted RBP14.13□□□□□ -0.15
CLN3-235ENST00000568497 C6orf106Q9H6K1 298 aaPredicted RBP14.13□□□□□ -0.15
CLN3-235ENST00000568497 DOCK9Q9BZ29 2069 aa14.13□□□□□ -0.15
CLN3-235ENST00000568497 A0A1W2PP55 124 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 NPC1O15118 1278 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 INSIG1O15503 277 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 BUB1BO60566 1050 aaPredicted RBP14.12□□□□□ -0.15
CLN3-235ENST00000568497 NDUFA10O95299 355 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 ITGAVP06756 1048 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 SRPRAP08240 638 aaKnown RBP14.12□□□□□ -0.15
CLN3-235ENST00000568497 FECHP22830 423 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 IL4RP24394 825 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 ACSL1P33121 698 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 PCK1P35558 622 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 PAPOLAP51003 745 aaKnown RBP14.12□□□□□ -0.15
CLN3-235ENST00000568497 OXCT1P55809 520 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 C21orf59P57076 290 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 DPYSQ14117 519 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 LRRC73Q5JTD7 316 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 COLEC12Q5KU26 742 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 ZFYVE27Q5T4F4 411 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 POLNQ7Z5Q5 900 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 SETD3Q86TU7 594 aaPredicted RBP14.12□□□□□ -0.15
CLN3-235ENST00000568497 AADATQ8N5Z0 425 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 NIPA2Q8N8Q9 360 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 DCAF4L2Q8NA75 395 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 RFFLQ8WZ73 363 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 CSPG4P5Q96PW8 444 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 ACE2Q9BYF1 805 aaPredicted RBP14.12□□□□□ -0.15
CLN3-235ENST00000568497 FAM117AQ9C073 453 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 GRPEL1Q9HAV7 217 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 IL17BQ9UHF5 180 aa14.12□□□□□ -0.15
CLN3-235ENST00000568497 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.12□□□□□ -0.15
CLN3-235ENST00000568497 TP53BP1Q12888 1972 aaPredicted RBP14.12□□□□□ -0.15
CLN3-235ENST00000568497 CHD5Q8TDI0 1954 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms