RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 SYCE2Q6PIF2 218 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 GPR149Q86SP6 731 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 SELENOSQ9BQE4 189 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 SLC17A6Q9P2U8 582 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 HELZP42694 1942 aaKnown RBP21.52■■□□□ 1.04
CLN3-209ENST00000561689 ZCWPW2A0A1B0GU75 182 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 ERICH4A6NGS2 130 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 USP1O94782 785 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 ERVK-10P10266 1014 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 TYRP14679 529 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 CR2P20023 1033 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 NMBRP28336 390 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 PLEKHG6Q3KR16 790 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 INO80DQ53TQ3 878 aaPredicted RBP21.52■■□□□ 1.04
CLN3-209ENST00000561689 PCID2Q5JVF3 399 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 SIRPB2Q5JXA9 342 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 EMC10Q5UCC4 262 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 ASTLQ6HA08 431 aaPredicted RBP21.52■■□□□ 1.04
CLN3-209ENST00000561689 CYS1Q717R9 158 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 TAOK1Q7L7X3 1001 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 SLC26A11Q86WA9 606 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.52■■□□□ 1.04
CLN3-209ENST00000561689 TTC17Q96AE7 1141 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 IFT43Q96FT9 208 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 LMLNQ96KR4 655 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 KIFC1Q9BW19 673 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 ARNT2Q9HBZ2 717 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 SCUBE2Q9NQ36 999 aa21.52■■□□□ 1.04
CLN3-209ENST00000561689 LOC285095A0A1B0GVY8 99 aa21.51■■□□□ 1.03
CLN3-209ENST00000561689 XIRP2A4UGR9 3374 aa21.51■■□□□ 1.03
CLN3-209ENST00000561689 INSIG1O15503 277 aa21.51■■□□□ 1.03
CLN3-209ENST00000561689 RETSATQ6NUM9 610 aa21.51■■□□□ 1.03
CLN3-209ENST00000561689 PKN3Q6P5Z2 889 aa21.51■■□□□ 1.03
CLN3-209ENST00000561689 TMEM184AQ6ZMB5 413 aa21.51■■□□□ 1.03
CLN3-209ENST00000561689 ARFGAP2Q8N6H7 521 aa21.51■■□□□ 1.03
CLN3-209ENST00000561689 EFHBQ8N7U6 833 aa21.51■■□□□ 1.03
CLN3-209ENST00000561689 MDM1Q8TC05 714 aa21.51■■□□□ 1.03
CLN3-209ENST00000561689 KIF9Q9HAQ2 790 aa21.51■■□□□ 1.03
CLN3-209ENST00000561689 FAM169AQ9Y6X4 670 aa21.51■■□□□ 1.03
CLN3-209ENST00000561689 A0A1W2PPM1 405 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 ATXN1LP0C7T5 689 aaKnown RBP21.5■■□□□ 1.03
CLN3-209ENST00000561689 SERPINH1P50454 418 aaKnown RBP21.5■■□□□ 1.03
CLN3-209ENST00000561689 CDK18Q07002 472 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 SEPT6Q14141 434 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 TRIM68Q6AZZ1 485 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 ANKRD54Q6NXT1 300 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 TRABD2AQ86V40 505 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 PPHLN1Q8NEY8 458 aaKnown RBP21.5■■□□□ 1.03
CLN3-209ENST00000561689 ACDQ96AP0 544 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 CERS2Q96G23 380 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 ASB16Q96NS5 453 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 LHX3Q9UBR4 397 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 SMAD6O43541 496 aaKnown RBP21.5■■□□□ 1.03
CLN3-209ENST00000561689 CTSOP43234 321 aaPredicted RBP21.5■■□□□ 1.03
CLN3-209ENST00000561689 RHOAP61586 193 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 GUCY1A3Q02108 690 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 GALNT3Q14435 633 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 PITRM1Q5JRX3 1037 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 ATXN7L2Q5T6C5 722 aaPredicted RBP21.5■■□□□ 1.03
CLN3-209ENST00000561689 CHRDL2Q6WN34 429 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 NAT16Q8N8M0 369 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 OTUB2Q96DC9 234 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 FEM1CQ96JP0 617 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 NUDCD1Q96RS6 583 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 ZNF576Q9H609 170 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 DUS2Q9NX74 493 aaKnown RBP21.5■■□□□ 1.03
CLN3-209ENST00000561689 TCAF1Q9Y4C2 921 aa21.5■■□□□ 1.03
CLN3-209ENST00000561689 SLC9A3R1O14745 358 aaPredicted RBP21.49■■□□□ 1.03
CLN3-209ENST00000561689 BRAFP15056 766 aa21.49■■□□□ 1.03
CLN3-209ENST00000561689 MGAT5Q09328 741 aa21.49■■□□□ 1.03
CLN3-209ENST00000561689 NR1H3Q13133 447 aa21.49■■□□□ 1.03
CLN3-209ENST00000561689 FUT11Q495W5 492 aa21.49■■□□□ 1.03
CLN3-209ENST00000561689 RASSF3Q86WH2 238 aa21.49■■□□□ 1.03
CLN3-209ENST00000561689 SMARCD2Q92925 531 aa21.49■■□□□ 1.03
CLN3-209ENST00000561689 RPL10LQ96L21 214 aaKnown RBP21.49■■□□□ 1.03
CLN3-209ENST00000561689 TM6SF2Q9BZW4 377 aa21.49■■□□□ 1.03
CLN3-209ENST00000561689 CHKBQ9Y259 395 aa21.49■■□□□ 1.03
CLN3-209ENST00000561689 PCDHGC4Q9Y5F7 938 aa21.49■■□□□ 1.03
CLN3-209ENST00000561689 WEE1P30291 646 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 PLK1P53350 603 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 MSLNQ13421 630 aaPredicted RBP21.48■■□□□ 1.03
CLN3-209ENST00000561689 MZB1Q8WU39 189 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 CDKL2Q92772 493 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 ATP2A3Q93084 1043 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 TRABDQ9H4I3 376 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 PSD3Q9NYI0 1048 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 SLC2A6Q9UGQ3 507 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 TRIM24O15164 1050 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 ADRA1DP25100 572 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 SLC12A1Q13621 1099 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 DHCR24Q15392 516 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 ESRP1Q6NXG1 681 aaKnown RBP21.48■■□□□ 1.03
CLN3-209ENST00000561689 C4orf33Q8N1A6 199 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 OSCP1Q8WVF1 389 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 ASIC4Q96FT7 647 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 ZFYVE19Q96K21 471 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 CAPS2Q9BXY5 557 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 KCNK9Q9NPC2 374 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 C20orf96Q9NUD7 363 aaPredicted RBP21.48■■□□□ 1.03
CLN3-209ENST00000561689 ZFATQ9P243 1243 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms