RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CALML4Q96GE6 196 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 ZNF419Q96HQ0 510 aaPredicted RBP1.74□□□□□ -2.13
USP3-209ENST00000558925 UROC1Q96N76 676 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 SH2D3AQ9BRG2 576 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 SRSF8Q9BRL6 282 aaKnown RBP1.74□□□□□ -2.13
USP3-209ENST00000558925 PIMREGQ9BSJ6 248 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 DUSP26Q9BV47 211 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 IFT27Q9BW83 186 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 XRN2Q9H0D6 950 aaKnown RBP eCLIP1.74□□□□□ -2.13
USP3-209ENST00000558925 CCDC68Q9H2F9 335 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 HIPK3Q9H422 1215 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 ENTPD7Q9NQZ7 604 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 PDGFCQ9NRA1 345 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 PLSCR4Q9NRQ2 329 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 SLC6A13Q9NSD5 602 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 BABAM1Q9NWV8 329 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 PPP1R14DQ9NXH3 145 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 KLHL13Q9P2N7 655 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 ARPP21Q9UBL0 812 aaPredicted RBP1.74□□□□□ -2.13
USP3-209ENST00000558925 SLCO3A1Q9UIG8 710 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 RPS6KA6Q9UK32 745 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 UTS2RQ9UKP6 389 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 SLC8A2Q9UPR5 921 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 DHDHQ9UQ10 334 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 TNFSF13BQ9Y275 285 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 WNT6Q9Y6F9 365 aa1.74□□□□□ -2.13
USP3-209ENST00000558925 TRBV5-7A0A0A0MS05 114 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 A0A1W2PPC1 479 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 A0A1W2PQ09 198 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 ARHGAP10A1A4S6 786 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 FRMD3A2A2Y4 597 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 WDR91A4D1P6 747 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 WIPF3A6NGB9 483 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 FAM90A8PA6NJQ4 464 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 HSPB2A8KAH6 182 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 A8MV72 311 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 B4DLN1 442 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 NPIPB11E5RHQ5 1161 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 RHODO00212 210 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 ADAM20O43506 726 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 HNRNPCL1O60812 293 aaKnown RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 PAGE4O60829 102 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 ERAL1O75616 437 aaKnown RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 BEST1O76090 585 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CCNDBP1O95273 360 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 IL1AP01583 271 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 EIF2S1P05198 315 aaKnown RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 HEXAP06865 529 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 HSP90AA1P07900 732 aaKnown RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 CD63P08962 238 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 FAM90A13PP0C7W8 464 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 FAM90A24PP0C7X0 464 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CSH1P0DML2 217 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CSH2P0DML3 217 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 WT1P19544 449 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 ITGAXP20702 1163 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 GPD1P21695 349 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 MCM3P25205 808 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 PSMA4P25789 261 aaKnown RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 TACR3P29371 465 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 GCH1P30793 250 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CPOXP36551 454 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 UBA7P41226 1012 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 SKIV2L2P42285 1042 aaKnown RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 DPP6P42658 865 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 PIP4K2AP48426 406 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 CXCR3P49682 368 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 GNAQP50148 359 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CLCN3P51790 818 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CLCN5P51795 746 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 ELLP55199 621 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 HDAC4P56524 1084 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CYP4A11Q02928 519 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CFHR1Q03591 330 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CHAF1BQ13112 559 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 FGFBP1Q14512 234 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 VEPH1Q14D04 833 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 PPP2R5BQ15173 497 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 TAF11Q15544 211 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 HSPB2Q16082 182 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 ASTE1Q2TB18 679 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 PLK5Q496M5 336 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 GLE1Q53GS7 698 aaKnown RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 CXorf66Q5JRM2 361 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 ENTPD8Q5MY95 495 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CFAP58Q5T655 872 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 ASPHD1Q5U4P2 390 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 GKAP1Q5VSY0 366 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 TMEM268Q5VZI3 342 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 TXNDC8Q6A555 127 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 ZNF280DQ6N043 979 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 KLHL35Q6PF15 583 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 NCEH1Q6PIU2 408 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 FBXO46Q6PJ61 603 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 TSSK4Q6SA08 328 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 IL20RBQ6UXL0 311 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 ZNF66Q6ZN08 573 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 QSOX2Q6ZRP7 698 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 BRINP3Q76B58 766 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CHST9Q7L1S5 443 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms