RNA–Protein interactions for RNA: ENST00000557623.5

SLIRP-211, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2 BASIC

Gene SLIRP, Length 865 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-211ENST00000557623 TCEAL6Q6IPX3 200 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 NEK5Q6P3R8 708 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 PRPF39Q86UA1 669 aaKnown RBP12.68□□□□□ -0.38
SLIRP-211ENST00000557623 VSIG1Q86XK7 387 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 CPNE8Q86YQ8 564 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 RHOT1Q8IXI2 618 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 ZCCHC9Q8N567 271 aaKnown RBP12.68□□□□□ -0.38
SLIRP-211ENST00000557623 NSMCE1Q8WV22 266 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 TCEAL3Q969E4 200 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 ARRDC3Q96B67 414 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 FAF2Q96CS3 445 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 ZNF599Q96NL3 588 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 CINPQ9BW66 212 aaPredicted RBP12.68□□□□□ -0.38
SLIRP-211ENST00000557623 CPEB1Q9BZB8 566 aaKnown RBP12.68□□□□□ -0.38
SLIRP-211ENST00000557623 ZDHHC5Q9C0B5 715 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 CAPN10Q9HC96 672 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 PREBQ9HCU5 417 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 ETNK2Q9NVF9 386 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 DDX56Q9NY93 547 aaKnown RBP12.68□□□□□ -0.38
SLIRP-211ENST00000557623 MFHAS1Q9Y4C4 1052 aa12.68□□□□□ -0.38
SLIRP-211ENST00000557623 A0A1W2PPC4 97 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 LRRD1A4D1F6 860 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 PLK4O00444 970 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 IGHV4-34P06331 123 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 ENGP17813 658 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 COMTP21964 271 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 ID4P47928 161 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 RENBPP51606 427 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 AFF3P51826 1226 aaKnown RBP12.67□□□□□ -0.38
SLIRP-211ENST00000557623 ATXN3P54252 364 aaPredicted RBP12.67□□□□□ -0.38
SLIRP-211ENST00000557623 PUM1Q14671 1186 aaKnown RBP eCLIP12.67□□□□□ -0.385e-7■■■□□ 19
SLIRP-211ENST00000557623 PAFAH1B3Q15102 231 aaKnown RBP12.67□□□□□ -0.38
SLIRP-211ENST00000557623 TEAD4Q15561 434 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 ZNF805Q5CZA5 627 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 ATXN7L2Q5T6C5 722 aaPredicted RBP12.67□□□□□ -0.38
SLIRP-211ENST00000557623 FBXL19Q6PCT2 694 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 GDPD4Q6W3E5 623 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 RAD9BQ6WBX8 426 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 TRIM69Q86WT6 500 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 BBS5Q8N3I7 341 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 ATPAF2Q8N5M1 289 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 OR6K2Q8NGY2 324 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 RAB7BQ96AH8 199 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 RTKNQ9BST9 563 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 MAK16Q9BXY0 300 aaKnown RBP12.67□□□□□ -0.38
SLIRP-211ENST00000557623 TMEM9BQ9NQ34 198 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 KLHL11Q9NVR0 708 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 LHX3Q9UBR4 397 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 SEPT3Q9UH03 358 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 TMEM131Q92545 1883 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 TRPM6Q9BX84 2022 aa12.67□□□□□ -0.38
SLIRP-211ENST00000557623 BTNL10A8MVZ5 291 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 C10orf142B7Z368 130 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 SLC30A4O14863 429 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 LATO43561 262 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 PSTPIP1O43586 416 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 GDF9O60383 454 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 BUB1BO60566 1050 aaPredicted RBP12.66□□□□□ -0.38
SLIRP-211ENST00000557623 ADRB3P13945 408 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 HSPA9P38646 679 aaKnown RBP12.66□□□□□ -0.38
SLIRP-211ENST00000557623 GRIA4P48058 902 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 CSNK1DP48730 415 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 VAV2P52735 878 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 NSUN2Q08J23 767 aaKnown RBP eCLIP12.66□□□□□ -0.38
SLIRP-211ENST00000557623 LBRQ14739 615 aaKnown RBP12.66□□□□□ -0.38
SLIRP-211ENST00000557623 STPG1Q5TH74 334 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 NCBP2-AS2Q69YL0 99 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 TIGD7Q6NT04 549 aaPredicted RBP12.66□□□□□ -0.38
SLIRP-211ENST00000557623 C11orf63Q6NUN7 778 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 IL27RAQ6UWB1 636 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 ARHGAP36Q6ZRI8 547 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 KIAA1328Q86T90 577 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 ZSCAN30Q86W11 494 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 TMEM139Q8IV31 216 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 NETO2Q8NC67 525 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 PCDH19Q8TAB3 1148 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 C1orf216Q8TAB5 229 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.66□□□□□ -0.38
SLIRP-211ENST00000557623 HCAR2Q8TDS4 363 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 RAPGEF5Q92565 580 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 SKA1Q96BD8 255 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 KLHL32Q96NJ5 620 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 RNF157Q96PX1 679 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 TUBGCP5Q96RT8 1024 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 TM9SF3Q9HD45 589 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 RXFP3Q9NSD7 469 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 DLL3Q9NYJ7 618 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 DMTF1Q9Y222 760 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.66□□□□□ -0.38
SLIRP-211ENST00000557623 ALG6Q9Y672 507 aa12.66□□□□□ -0.38
SLIRP-211ENST00000557623 GVINP1Q7Z2Y8 2422 aa12.65□□□□□ -0.38
SLIRP-211ENST00000557623 C16orf96A6NNT2 1141 aa12.65□□□□□ -0.38
SLIRP-211ENST00000557623 RNF103O00237 685 aa12.65□□□□□ -0.38
SLIRP-211ENST00000557623 PJA2O43164 708 aa12.65□□□□□ -0.38
SLIRP-211ENST00000557623 AP1G1O43747 822 aa12.65□□□□□ -0.38
SLIRP-211ENST00000557623 MFSD11O43934 449 aa12.65□□□□□ -0.38
SLIRP-211ENST00000557623 MAFKO60675 156 aa12.65□□□□□ -0.38
SLIRP-211ENST00000557623 RNGTTO60942 597 aaKnown RBP12.65□□□□□ -0.38
SLIRP-211ENST00000557623 PCDH8O95206 1070 aa12.65□□□□□ -0.38
SLIRP-211ENST00000557623 KRT1P04264 644 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms