RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 SLC46A1Q96NT5 459 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 NEUROG2Q9H2A3 272 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 SMARCAL1Q9NZC9 954 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 COX16Q9P0S2 106 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 STIM2Q9P246 746 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 PCDHGC3Q9UN70 934 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 COL27A1Q8IZC6 1860 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-230ENST00000557427 A0A1B0GVM2 712 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 TBL1XO60907 577 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 SASH3O75995 380 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 TRUB2O95900 331 aaKnown RBP12.78□□□□□ -0.36
SHMT2-230ENST00000557427 GIMD1P0DJR0 217 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 HLA-FP30511 346 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 SLC6A4P31645 630 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 DNA2P51530 1060 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 SGSHP51688 502 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 CENPCQ03188 943 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 TLE1Q04724 770 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 ZNF211Q13398 564 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-230ENST00000557427 FNDC3BQ53EP0 1204 aaKnown RBP12.78□□□□□ -0.36
SHMT2-230ENST00000557427 ZC3H12AQ5D1E8 599 aaKnown RBP12.78□□□□□ -0.36
SHMT2-230ENST00000557427 NUGGCQ68CJ6 796 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 HIST2H2BCQ6DN03 193 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 IGF2-ASQ6U949 168 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 USP30Q70CQ3 517 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 TAC4Q86UU9 113 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 ADIPOR2Q86V24 386 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 FAM217AQ8IXS0 508 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 DEFB106AQ8N104 65 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 ZNF564Q8TBZ8 553 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-230ENST00000557427 FCRL2Q96LA5 508 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-230ENST00000557427 SERPINB11Q96P15 392 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 PSMG3-AS1Q96PY0 264 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 NUP85Q9BW27 656 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 PABPC3Q9H361 631 aaKnown RBP12.78□□□□□ -0.36
SHMT2-230ENST00000557427 POPDC2Q9HBU9 364 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 FBXL12Q9NXK8 326 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 STOML2Q9UJZ1 356 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 SATB2Q9UPW6 733 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 TLR6Q9Y2C9 796 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 ALG6Q9Y672 507 aa12.78□□□□□ -0.36
SHMT2-230ENST00000557427 IGLV3-27P01718 113 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 ERBB2P04626 1255 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 CTNNA2P26232 953 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 HOXD9P28356 352 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-230ENST00000557427 SNX16P57768 344 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 RNASE9P60153 205 aaKnown RBP12.77□□□□□ -0.37
SHMT2-230ENST00000557427 PITX1P78337 314 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-230ENST00000557427 E2F5Q15329 346 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 PPP2R5EQ16537 467 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 TTC31Q49AM3 519 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-230ENST00000557427 FAM133BQ5BKY9 247 aaKnown RBP12.77□□□□□ -0.37
SHMT2-230ENST00000557427 EFHC1Q5JVL4 640 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 PIK3R6Q5UE93 754 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 ZNF776Q68DI1 518 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-230ENST00000557427 NADSYN1Q6IA69 706 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 FAM183BPQ6ZVS7 135 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 MCOLN2Q8IZK6 566 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 CFAP52Q8N1V2 620 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 UBL4BQ8N7F7 174 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 EXTL1Q92935 676 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 RNF34Q969K3 372 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 SERAC1Q96JX3 654 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 DEPDC7Q96QD5 511 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 NAP1L3Q99457 506 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-230ENST00000557427 SLC2A11Q9BYW1 496 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 RSPH9Q9H1X1 276 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-230ENST00000557427 FAM204AQ9H8W3 233 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 VIPAS39Q9H9C1 493 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 CNOT8Q9UFF9 292 aaKnown RBP12.77□□□□□ -0.37
SHMT2-230ENST00000557427 DMGDHQ9UI17 866 aaKnown RBP12.77□□□□□ -0.37
SHMT2-230ENST00000557427 MAN2B2Q9Y2E5 1009 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 CEP83Q9Y592 693 aa12.77□□□□□ -0.37
SHMT2-230ENST00000557427 CREBBPQ92793 2442 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 LY6G6EA0A0G2JKS1 128 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 A0A1W2PP55 124 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 CDRT15L2A8MXV6 281 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 LATS1O95835 1130 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 FAM87AP0C7U9 286 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 NSFP46459 744 aaKnown RBP12.76□□□□□ -0.37
SHMT2-230ENST00000557427 RPS24P62847 133 aaKnown RBP12.76□□□□□ -0.37
SHMT2-230ENST00000557427 NOMO3P69849 1222 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 CBX1P83916 185 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 DAB2P98082 770 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 SLC6A3Q01959 620 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 SERINC3Q13530 473 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 CASP8Q14790 479 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 PTPN20Q4JDL3 420 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 C2CD6Q53TS8 623 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 C3orf38Q5JPI3 329 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 CHST9Q7L1S5 443 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 MON1BQ7L1V2 547 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 KIAA0907Q7Z7F0 614 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-230ENST00000557427 PHF13Q86YI8 300 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-230ENST00000557427 IFT20Q8IY31 132 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 CARNMT1Q8N4J0 409 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 EIF1ADQ8N9N8 165 aaKnown RBP12.76□□□□□ -0.37
SHMT2-230ENST00000557427 TMEM35BQ8NCS4 154 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 OR2T34Q8NGX1 318 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 AENQ8WTP8 325 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms