RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 PCDH8O95206 1070 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 PIGNO95427 931 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 CER1O95813 267 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 PRLRP16471 622 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 CYLC1P35663 651 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-219ENST00000555563 ARHGAP25P42331 645 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 MAGEA1P43355 309 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 NOVA1P51513 510 aaKnown RBP13.9□□□□□ -0.18
SHMT2-219ENST00000555563 RAD51Q06609 339 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 RFTN1Q14699 578 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-219ENST00000555563 PDK2Q15119 407 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 ZNF284Q2VY69 593 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 HLA-BQ31612 363 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 SETMARQ53H47 684 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-219ENST00000555563 LRRC73Q5JTD7 316 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 ZFYVE27Q5T4F4 411 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 TMCO4Q5TGY1 634 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 SEL1L3Q68CR1 1132 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 NCBP2-AS2Q69YL0 99 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 NEK5Q6P3R8 708 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 IL27RAQ6UWB1 636 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 PRPF39Q86UA1 669 aaKnown RBP13.9□□□□□ -0.18
SHMT2-219ENST00000555563 HORMAD1Q86X24 394 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 ATPAF2Q8N5M1 289 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 TSEN2Q8NCE0 465 aaKnown RBP13.9□□□□□ -0.18
SHMT2-219ENST00000555563 PCDH19Q8TAB3 1148 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 KLK6Q92876 244 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 FAF2Q96CS3 445 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 KLHL32Q96NJ5 620 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 GAREM1Q9H706 876 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 GGT7Q9UJ14 662 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 TFR2Q9UP52 801 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 ZFR2Q9UPR6 939 aaKnown RBP13.9□□□□□ -0.18
SHMT2-219ENST00000555563 DMTF1Q9Y222 760 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 TMEM131Q92545 1883 aa13.9□□□□□ -0.18
SHMT2-219ENST00000555563 A0A1W2PR77 199 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 MUSKO15146 869 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 AP1G1O43747 822 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 PEX11BO96011 259 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 CD38P28907 300 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 CDC25BP30305 580 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 NUDT1P36639 197 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 C21orf59P57076 290 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 LBRQ14739 615 aaKnown RBP13.89□□□□□ -0.19
SHMT2-219ENST00000555563 SPA17Q15506 151 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 TMEM259Q4ZIN3 620 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 ANKRD20A8PQ5CZ79 823 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 RAPGEF5Q92565 580 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 ZNF599Q96NL3 588 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 MYOCQ99972 504 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 FZD3Q9NPG1 666 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 SEPT3Q9UH03 358 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 CA5BQ9Y2D0 317 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 HYOU1Q9Y4L1 999 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 PCDHA13Q9Y5I0 950 aa13.89□□□□□ -0.19
SHMT2-219ENST00000555563 NCOR2Q9Y618 2525 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 DOCK9Q9BZ29 2069 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 TSPAN11A1L157 253 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 LRRD1A4D1F6 860 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 PRAMEF26H0Y7S4 382 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 GIPC1O14908 333 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 SLC31A1O15431 190 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 MAFKO60675 156 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 KCNK5O95279 499 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 NDUFA10O95299 355 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 MAP3K6O95382 1288 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 KRT1P04264 644 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 CD59P13987 128 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 CSRP1P21291 193 aaKnown RBP13.88□□□□□ -0.19
SHMT2-219ENST00000555563 COMTP21964 271 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 KDELR1P24390 212 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 CTSKP43235 329 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 NOP2P46087 812 aaKnown RBP13.88□□□□□ -0.19
SHMT2-219ENST00000555563 HADHBP55084 474 aaKnown RBP13.88□□□□□ -0.19
SHMT2-219ENST00000555563 SLC10A7Q0GE19 358 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 GALNT2Q10471 571 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 FGL2Q14314 439 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 PAFAH1B3Q15102 231 aaKnown RBP13.88□□□□□ -0.19
SHMT2-219ENST00000555563 SLC45A4Q5BKX6 768 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 KIAA1161Q6NSJ0 714 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 PSAPL1Q6NUJ1 521 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 RAD9BQ6WBX8 426 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 PIP4P1Q86T03 277 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 TMTC1Q8IUR5 882 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 MAP7D3Q8IWC1 876 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 PQLC3Q8N755 202 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 SPC24Q8NBT2 197 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 TMEM145Q8NBT3 493 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 DEFB124Q8NES8 71 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 RAB7BQ96AH8 199 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 PSKH2Q96QS6 385 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 TUBGCP5Q96RT8 1024 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 CPEB1Q9BZB8 566 aaKnown RBP13.88□□□□□ -0.19
SHMT2-219ENST00000555563 GOLPH3Q9H4A6 298 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 LUC7LQ9NQ29 371 aaKnown RBP13.88□□□□□ -0.19
SHMT2-219ENST00000555563 DKK3Q9UBP4 350 aa13.88□□□□□ -0.19
SHMT2-219ENST00000555563 ASCC3Q8N3C0 2202 aaKnown RBP13.88□□□□□ -0.19
SHMT2-219ENST00000555563 SHROOM3Q8TF72 1996 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 C3orf70A6NLC5 250 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-219ENST00000555563 UPK3BL1B0FP48 263 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms