RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SNX31Q8N9S9 440 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 MCPH1Q8NEM0 835 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 FBXO22Q8NEZ5 403 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 CALML6Q8TD86 181 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 ATL1Q8WXF7 558 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 CNBD2Q96M20 576 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 FAM111AQ96PZ2 611 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 PAIP1Q9H074 479 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 NRBP2Q9NSY0 501 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 PARVAQ9NVD7 372 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 PNMA8BQ9ULN7 279 aaPredicted RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 NOX1Q9Y5S8 564 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 CPQQ9Y646 472 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 CITO14578 2027 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 PTPRDP23468 1912 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 CNTNAP2Q9UHC6 1331 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 ARHGEF37A1IGU5 675 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 KRBA1A5PL33 1030 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 ANKRD34BA5PLL1 514 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 E5RJQ4 531 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 H3BMQ9 156 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 SCO2O43819 266 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 UGT1A9O60656 530 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 PAHP00439 452 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 RALBP11234 206 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 COX4I1P13073 169 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 ATP6V1B1P15313 513 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 UGT1A6P19224 532 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 UGT1A1P22309 533 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 UGT1A4P22310 534 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 AXLP30530 894 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 UGT1A3P35503 534 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 UGT1A5P35504 534 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 CD86P42081 329 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 CPA2P48052 419 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 TLE2Q04725 743 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 SELPLGQ14242 412 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 EFTUD2Q15029 972 aaKnown RBP eCLIP5.32□□□□□ -1.56
USP28-213ENST00000544967 KRT80Q6KB66 452 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 C16orf46Q6P387 395 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 DNAAF5Q86Y56 855 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 DCP2Q8IU60 420 aaKnown RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 NUDCD3Q8IVD9 361 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 ELMOD1Q8N336 334 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 RAB2BQ8WUD1 216 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 ZNF689Q96CS4 500 aaPredicted RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 COG8Q96MW5 612 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 ACAP3Q96P50 834 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 FZD8Q9H461 694 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 UGT1A7Q9HAW7 530 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 UGT1A10Q9HAW8 530 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 UGT1A8Q9HAW9 530 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 IL20Q9NYY1 176 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.32□□□□□ -1.56
USP28-213ENST00000544967 PFDN2Q9UHV9 154 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 ANAPC7Q9UJX3 599 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 TRPV2Q9Y5S1 764 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 CHADO15335 359 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 CYP26A1O43174 497 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 TIPRLO75663 272 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 SERPINE1P05121 402 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 BMP2P12643 396 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 ATF4P18848 351 aaPredicted RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 CAPN3P20807 821 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 NAMPTP43490 491 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 C1QBPQ07021 282 aaKnown RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 GPS1Q13098 491 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 IKBKEQ14164 716 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 TFDP1Q14186 410 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 MXD4Q14582 209 aaPredicted RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 EMC2Q15006 297 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 KCNJ8Q15842 424 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 TCTN1Q2MV58 587 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 TRIM16LQ309B1 348 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 DCAF6Q58WW2 860 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 PLEKHA7Q6IQ23 1121 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 CNKSR3Q6P9H4 555 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 BNC2Q6ZN30 1099 aaPredicted RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 LRRC8DQ7L1W4 858 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 GSTA5Q7RTV2 222 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 ZNF720Q7Z2F6 126 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 ZNF598Q86UK7 904 aaKnown RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 BPHLQ86WA6 291 aaPredicted RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 PHF13Q86YI8 300 aaPredicted RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 PPM1KQ8N3J5 372 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 CNTD1Q8N815 330 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 C7orf31Q8N865 590 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 SPERTQ8NA61 448 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 ATG4AQ8WYN0 398 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 TTC17Q96AE7 1141 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 TAMM41Q96BW9 452 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 SMAD5Q99717 465 aaKnown RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 TRIM56Q9BRZ2 755 aaKnown RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 HERPUD2Q9BSE4 406 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 EFHD1Q9BUP0 239 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 C12orf10Q9HB07 376 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 HMG20AQ9NP66 347 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 UBE2TQ9NPD8 197 aaPredicted RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 SEPT11Q9NVA2 429 aaKnown RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 GIMAP2Q9UG22 337 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms