RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 NSUN2Q08J23 767 aaKnown RBP eCLIP13.16□□□□□ -0.3
CCDC42-202ENST00000539522 STARD3Q14849 445 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 ZNF528Q3MIS6 628 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 MARC1Q5VT66 337 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 CCDC70Q6NSX1 233 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 NCEH1Q6PIU2 408 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 SRLQ86TD4 932 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 PRPF39Q86UA1 669 aaKnown RBP13.16□□□□□ -0.3
CCDC42-202ENST00000539522 WDR5BQ86VZ2 330 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 ZNF567Q8N184 647 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 PIP4K2CQ8TBX8 421 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 GRIN3AQ8TCU5 1115 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 TFB1MQ8WVM0 346 aaKnown RBP13.16□□□□□ -0.3
CCDC42-202ENST00000539522 NKD2Q969F2 451 aaPredicted RBP13.16□□□□□ -0.3
CCDC42-202ENST00000539522 CINPQ9BW66 212 aaPredicted RBP13.16□□□□□ -0.3
CCDC42-202ENST00000539522 PABPC3Q9H361 631 aaKnown RBP13.16□□□□□ -0.3
CCDC42-202ENST00000539522 POLMQ9NP87 494 aaPredicted RBP13.16□□□□□ -0.3
CCDC42-202ENST00000539522 ITM2CQ9NQX7 267 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 RBM22Q9NW64 420 aaKnown RBP eCLIP13.16□□□□□ -0.3
CCDC42-202ENST00000539522 SEPT3Q9UH03 358 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 IL36AQ9UHA7 158 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 INVSQ9Y283 1065 aa13.16□□□□□ -0.3
CCDC42-202ENST00000539522 IGHV1OR15-9A0A0B4J2B8 117 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 GOLGA6L10A0A0M3HER8 536 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 HACD1B0YJ81 288 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 H0Y858 1186 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 PPP1R12AO14974 1030 aaPredicted RBP13.15□□□□□ -0.3
CCDC42-202ENST00000539522 ITIH2P19823 946 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 SLC8A1P32418 973 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 P2RY2P41231 377 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 NUBP1P53384 320 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 SNRPD1P62314 119 aaKnown RBP13.15□□□□□ -0.3
CCDC42-202ENST00000539522 CNTN1Q12860 1018 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 TRAF2Q12933 501 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 PTPRRQ15256 657 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 GLE1Q53GS7 698 aaKnown RBP13.15□□□□□ -0.3
CCDC42-202ENST00000539522 TEX44Q53QW1 395 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 PIP5KL1Q5T9C9 394 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 AGBL4Q5VU57 503 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 ZNF776Q68DI1 518 aaPredicted RBP13.15□□□□□ -0.3
CCDC42-202ENST00000539522 TIGD7Q6NT04 549 aaPredicted RBP13.15□□□□□ -0.3
CCDC42-202ENST00000539522 PARS2Q7L3T8 475 aaKnown RBP13.15□□□□□ -0.3
CCDC42-202ENST00000539522 METTL3Q86U44 580 aaKnown RBP13.15□□□□□ -0.3
CCDC42-202ENST00000539522 CAMK1DQ8IU85 385 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 TMIEQ8NEW7 156 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 HTR3CQ8WXA8 447 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 OR8D1Q8WZ84 308 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 ECHDC3Q96DC8 303 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 SIPA1Q96FS4 1042 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 TEKT5Q96M29 485 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 GDAP1L1Q96MZ0 367 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 SMIM14Q96QK8 99 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 NUDCD1Q96RS6 583 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 HEPHQ9BQS7 1158 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 TMEM121Q9BTD3 319 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 CPEB1Q9BZB8 566 aaKnown RBP13.15□□□□□ -0.3
CCDC42-202ENST00000539522 BRD8Q9H0E9 1235 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 ZDHHC6Q9H6R6 413 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 HOMER3Q9NSC5 361 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 WDR87Q6ZQQ6 2873 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 LAMA1P25391 3075 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 MYLKQ15746 1914 aa13.15□□□□□ -0.3
CCDC42-202ENST00000539522 PLXNA2O75051 1894 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 UQCRHLA0A096LP55 91 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 CCDC163A0A0D9SF12 145 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 A0A1W2PP55 124 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 TSPAN11A1L157 253 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 H7C0C1 242 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 AXIN1O15169 862 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 FZD6O60353 706 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 POP4O95707 220 aaKnown RBP13.14□□□□□ -0.31
CCDC42-202ENST00000539522 IGSF6O95976 241 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 PRLP01236 227 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 IL1BP01584 269 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 UGT2B4P06133 528 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 UQCRHP07919 91 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 ETS1P14921 441 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 ACSL1P33121 698 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 ABL2P42684 1182 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 ATP5OP48047 213 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 KCNJ1P48048 391 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 SCNN1BP51168 640 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 RENBPP51606 427 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 SKOR1P84550 965 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 SNX1Q13596 522 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 E2F5Q15329 346 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 CYP1B1Q16678 543 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 KIAA1324Q6UXG2 1013 aaKnown RBP13.14□□□□□ -0.31
CCDC42-202ENST00000539522 LONP2Q86WA8 852 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 ABCA7Q8IZY2 2146 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.14□□□□□ -0.31
CCDC42-202ENST00000539522 GPR161Q8N6U8 529 aaKnown RBP13.14□□□□□ -0.31
CCDC42-202ENST00000539522 LRRN4CLQ8ND94 238 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 SPATA22Q8NHS9 363 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 PRCCQ92733 491 aaPredicted RBP13.14□□□□□ -0.31
CCDC42-202ENST00000539522 RTP4Q96DX8 246 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 IMP4Q96G21 291 aaKnown RBP13.14□□□□□ -0.31
CCDC42-202ENST00000539522 OXNAD1Q96HP4 312 aaPredicted RBP13.14□□□□□ -0.31
CCDC42-202ENST00000539522 AGAP3Q96P47 875 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 SEMA3CQ99985 751 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms