RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 TBC1D3LB9A6J9 549 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 GDF9O60383 454 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 PEX11BO96011 259 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 UGT2B4P06133 528 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 TBC1D3HP0C7X1 549 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 ADRB3P13945 408 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 NUDT1P36639 197 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 HSPA9P38646 679 aaKnown RBP15.24■□□□□ 0.03
CPSF1-208ENST00000532560 GARSP41250 739 aaKnown RBP15.24■□□□□ 0.03
CPSF1-208ENST00000532560 CSNK1DP48730 415 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 RENBPP51606 427 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 LBRQ14739 615 aaKnown RBP15.24■□□□□ 0.03
CPSF1-208ENST00000532560 TBC1D3GQ6DHY5 549 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 TBC1D3CQ6IPX1 549 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 NEK5Q6P3R8 708 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 KIAA1328Q86T90 577 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 TBC1D3Q8IZP1 549 aaPredicted RBP15.24■□□□□ 0.03
CPSF1-208ENST00000532560 TSEN2Q8NCE0 465 aaKnown RBP15.24■□□□□ 0.03
CPSF1-208ENST00000532560 RNF157Q96PX1 679 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 PSKH2Q96QS6 385 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 TUBGCP5Q96RT8 1024 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 CACNA1EQ15878 2313 aa15.24■□□□□ 0.03
CPSF1-208ENST00000532560 DMXL1Q9Y485 3027 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 CEP250Q9BV73 2442 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 C16orf96A6NNT2 1141 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 AP1G1O43747 822 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 ENGP17813 658 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 MAPK8P45983 427 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 RGRP47804 291 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 AFF3P51826 1226 aaKnown RBP15.23■□□□□ 0.03
CPSF1-208ENST00000532560 NSUN2Q08J23 767 aaKnown RBP eCLIP15.23■□□□□ 0.03
CPSF1-208ENST00000532560 SLC10A7Q0GE19 358 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 ZNF235Q14590 738 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 RSPO4Q2I0M5 234 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-208ENST00000532560 SLC9A4Q6AI14 798 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 FBXL19Q6PCT2 694 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 GDPD4Q6W3E5 623 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 DAAM2Q86T65 1068 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 PLD5Q8N7P1 536 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 CCDC112Q8NEF3 446 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 NSMCE1Q8WV22 266 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 FATE1Q969F0 183 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 RAB7BQ96AH8 199 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 RMDN1Q96DB5 314 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 KLHL32Q96NJ5 620 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 DESI2Q9BSY9 194 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 TM9SF3Q9HD45 589 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 DLL3Q9NYJ7 618 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 DKK3Q9UBP4 350 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 SLCO1B1Q9Y6L6 691 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 DUSP10Q9Y6W6 482 aa15.23■□□□□ 0.03
CPSF1-208ENST00000532560 TSPAN11A1L157 253 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 ARHGAP33O14559 1287 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 APOL1O14791 398 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 SLC30A4O14863 429 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 MUSKO15146 869 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 INSIG1O15503 277 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 SYPP08247 313 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 TNNT1P13805 278 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 ZFXP17010 805 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-208ENST00000532560 MX2P20592 715 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 GRIA4P48058 902 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 AP1S1P61966 158 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 RACK1P63244 317 aaKnown RBP15.22■□□□□ 0.03
CPSF1-208ENST00000532560 GBE1Q04446 702 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 TAZQ16635 292 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 IFI16Q16666 785 aaKnown RBP15.22■□□□□ 0.03
CPSF1-208ENST00000532560 ODF2Q5BJF6 829 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 STPG1Q5TH74 334 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 MFSD7Q6UXD7 560 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 SRLQ86TD4 932 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 KATNAL2Q8IYT4 538 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 BBS5Q8N3I7 341 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-208ENST00000532560 HCAR2Q8TDS4 363 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 HDAC11Q96DB2 347 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 ZNF641Q96N77 438 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-208ENST00000532560 ZNF830Q96NB3 372 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-208ENST00000532560 TSGA13Q96PP4 275 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 MGME1Q9BQP7 344 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 ZDHHC5Q9C0B5 715 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 EBF2Q9HAK2 575 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 TMEM9BQ9NQ34 198 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 DTLQ9NZJ0 730 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 DMTF1Q9Y222 760 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.22■□□□□ 0.03
CPSF1-208ENST00000532560 FADS3Q9Y5Q0 445 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 PLXNA2O75051 1894 aa15.22■□□□□ 0.03
CPSF1-208ENST00000532560 CDX4O14627 284 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-208ENST00000532560 ARHGAP6O43182 974 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 RRP9O43818 475 aaKnown RBP15.21■□□□□ 0.03
CPSF1-208ENST00000532560 RNGTTO60942 597 aaKnown RBP15.21■□□□□ 0.03
CPSF1-208ENST00000532560 PIGNO95427 931 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 CCNCP24863 283 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 CTNNA1P35221 906 aaKnown RBP15.21■□□□□ 0.03
CPSF1-208ENST00000532560 ABL2P42684 1182 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 CDKN2BP42772 138 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 MMP13P45452 471 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 MARCKSL1P49006 195 aa15.21■□□□□ 0.03
CPSF1-208ENST00000532560 NAP1L1P55209 391 aaKnown RBP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms