RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 HPCAL4Q9UM19 191 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 ITM2BQ9Y287 266 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 DAAM1Q9Y4D1 1078 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 SHROOM3Q8TF72 1996 aa11.53□□□□□ -0.56
VPS28-214ENST00000531032 KALRNO60229 2985 aa11.52□□□□□ -0.56
VPS28-214ENST00000531032 TK2O00142 265 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 KRIT1O00522 736 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 NEMP1O14524 444 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 AREL1O15033 823 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 ATXN7O15265 892 aaPredicted RBP11.52□□□□□ -0.57
VPS28-214ENST00000531032 AQP9O43315 295 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 KDELR3O43731 214 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 CSO75390 466 aaKnown RBP11.52□□□□□ -0.57
VPS28-214ENST00000531032 GJB6O95452 261 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 POP4O95707 220 aaKnown RBP11.52□□□□□ -0.57
VPS28-214ENST00000531032 UGT2B4P06133 528 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 UNGP13051 313 aaPredicted RBP11.52□□□□□ -0.57
VPS28-214ENST00000531032 KLK7P49862 253 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 SNRPD1P62314 119 aaKnown RBP11.52□□□□□ -0.57
VPS28-214ENST00000531032 EIF2B5Q13144 721 aaKnown RBP11.52□□□□□ -0.57
VPS28-214ENST00000531032 KRT31Q15323 416 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 MYLK3Q32MK0 819 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 PHLDB2Q86SQ0 1253 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 SPACA3Q8IXA5 215 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 LSMEM2Q8N112 164 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 RYBPQ8N488 228 aaPredicted RBP11.52□□□□□ -0.57
VPS28-214ENST00000531032 IFI44Q8TCB0 444 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 FAM172AQ8WUF8 416 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 CENPTQ96BT3 561 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 HIC2Q96JB3 615 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 ZNF578Q96N58 590 aaPredicted RBP11.52□□□□□ -0.57
VPS28-214ENST00000531032 FCRL3Q96P31 734 aaPredicted RBP11.52□□□□□ -0.57
VPS28-214ENST00000531032 MAGEB5Q9BZ81 275 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 FAM207AQ9NSI2 230 aaPredicted RBP11.52□□□□□ -0.57
VPS28-214ENST00000531032 NCKIPSDQ9NZQ3 722 aa11.52□□□□□ -0.57
VPS28-214ENST00000531032 ZSCAN5CA6NGD5 496 aaPredicted RBP11.51□□□□□ -0.57
VPS28-214ENST00000531032 TPP1O14773 563 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 USP12O75317 370 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 TMCC1O94876 653 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 MPOP05164 745 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 KRT3P12035 628 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 JUNDP17535 347 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 RFC1P35251 1148 aaPredicted RBP11.51□□□□□ -0.57
VPS28-214ENST00000531032 NSFP46459 744 aaKnown RBP11.51□□□□□ -0.57
VPS28-214ENST00000531032 LSSP48449 732 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 PCBP4P57723 403 aaKnown RBP11.51□□□□□ -0.57
VPS28-214ENST00000531032 GABREP78334 506 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 CCDC173Q0VFZ6 552 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 CDKN3Q16667 212 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 ATXN7L2Q5T6C5 722 aaPredicted RBP11.51□□□□□ -0.57
VPS28-214ENST00000531032 GDPD4Q6W3E5 623 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 LEKR1Q6ZMV7 388 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 PHF13Q86YI8 300 aaPredicted RBP11.51□□□□□ -0.57
VPS28-214ENST00000531032 RTL3Q8N8U3 475 aaKnown RBP11.51□□□□□ -0.57
VPS28-214ENST00000531032 LSM14AQ8ND56 463 aaKnown RBP11.51□□□□□ -0.57
VPS28-214ENST00000531032 ZNF248Q8NDW4 579 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 MAPK15Q8TD08 544 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 BTN2A2Q8WVV5 523 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 CASKIN2Q8WXE0 1202 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 SLC39A7Q92504 469 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 TBATAQ96M53 351 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 GDAP1L1Q96MZ0 367 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 KLHL32Q96NJ5 620 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 PCDHB18PQ96TA0 734 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 LGMNQ99538 433 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 ABCG4Q9H172 646 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 VPS16Q9H269 839 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 NOL6Q9H6R4 1146 aaKnown RBP11.51□□□□□ -0.57
VPS28-214ENST00000531032 POLR1BQ9H9Y6 1135 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 NLRC4Q9NPP4 1024 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 IPO11Q9UI26 975 aaKnown RBP11.51□□□□□ -0.57
VPS28-214ENST00000531032 SALL4Q9UJQ4 1053 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 SIK3Q9Y2K2 1263 aa11.51□□□□□ -0.57
VPS28-214ENST00000531032 TEX51A0A1B0GUA7 166 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 TCRBV5S1A1TA0A578 114 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 EME2A4GXA9 379 aaPredicted RBP11.5□□□□□ -0.57
VPS28-214ENST00000531032 TOR1BO14657 336 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 BUB1O43683 1085 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 C1QL1O75973 258 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 GPD1P21695 349 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 TGM2P21980 687 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 IGFALSP35858 605 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 STAT1P42224 750 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 ERVPABLB-1P60509 514 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 YPEL5P62699 121 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 PTK2BQ14289 1009 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 CLEC16AQ2KHT3 1053 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 ISXQ2M1V0 245 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 DEFB133Q30KQ1 61 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 INO80DQ53TQ3 878 aaPredicted RBP11.5□□□□□ -0.57
VPS28-214ENST00000531032 FKBP15Q5T1M5 1219 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 GUSBP11Q6P575 273 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 WDR59Q6PJI9 974 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 IGF2-ASQ6U949 168 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 MON1BQ7L1V2 547 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 GPR155Q7Z3F1 870 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 SLFN11Q7Z7L1 901 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 TTC7BQ86TV6 843 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 RBFAQ8N0V3 343 aa11.5□□□□□ -0.57
VPS28-214ENST00000531032 PYROXD2Q8N2H3 581 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms