RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	LZTS3	O60299	673 aa	Predicted RBP	18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	CS	O75390	466 aa	Known RBP	18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	GJB6	O95452	261 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	PRB1	P04280	392 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	MPO	P05164	745 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	JUND	P17535	347 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	CHRNB2	P17787	502 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	KLK7	P49862	253 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	HDAC4	P56524	1084 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	JAM2	P57087	298 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	PCBP4	P57723	403 aa	Known RBP	18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	CT47A1	Q5JQC4	288 aa	Predicted RBP	18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	PHLDB2	Q86SQ0	1253 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	CCDC185	Q8N715	623 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	ZNF248	Q8NDW4	579 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	SLC30A5	Q8TAD4	765 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	MAPK15	Q8TD08	544 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	FAM172A	Q8WUF8	416 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	ASB12	Q8WXK4	309 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	ZNF578	Q96N58	590 aa	Predicted RBP	18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	ABCG4	Q9H172	646 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	FAM207A	Q9NSI2	230 aa	Predicted RBP	18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	CHMP5	Q9NZZ3	219 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	KLF15	Q9UIH9	416 aa		18.7	■□□□□ 0.58
HDAC6-231	ENST00000488905	TK2	O00142	265 aa		18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	USP12	O75317	370 aa		18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	DXO	O77932	396 aa	Known RBP	18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	PLEK	P08567	350 aa	Predicted RBP	18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	SOX5	P35711	763 aa		18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	GSC	P56915	257 aa	Predicted RBP	18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	PFN3	P60673	137 aa		18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	POLR2F	P61218	127 aa	Known RBP	18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	CDKN3	Q16667	212 aa		18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	TRIM72	Q6ZMU5	477 aa		18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	LEKR1	Q6ZMV7	388 aa		18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	SLC39A7	Q92504	469 aa		18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	CENPI	Q92674	756 aa	Predicted RBP	18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	NTAN1	Q96AB6	310 aa		18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	HIC2	Q96JB3	615 aa		18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	KLHL32	Q96NJ5	620 aa		18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	MAGEB5	Q9BZ81	275 aa		18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	NCKIPSD	Q9NZQ3	722 aa		18.69	■□□□□ 0.58
HDAC6-231	ENST00000488905	TEX51	A0A1B0GUA7	166 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	RIOK3	O14730	519 aa	Known RBP	18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	AREL1	O15033	823 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	EPHB6	O15197	1021 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	C1QL1	O75973	258 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	TMCC1	O94876	653 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	POP4	O95707	220 aa	Known RBP	18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	UNG	P13051	313 aa	Predicted RBP	18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	IGFALS	P35858	605 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	NSF	P46459	744 aa	Known RBP	18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	PTP4A2	Q12974	167 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	EIF2B5	Q13144	721 aa	Known RBP	18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	KRT31	Q15323	416 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	DEFB133	Q30KQ1	61 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	MYLK3	Q32MK0	819 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	LRRC73	Q5JTD7	316 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	CDKAL1	Q5VV42	579 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	GUSBP11	Q6P575	273 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	GPR155	Q7Z3F1	870 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	LSMEM2	Q8N112	164 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	LMX1A	Q8TE12	382 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	GDAP1L1	Q96MZ0	367 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	VPS16	Q9H269	839 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	POLR1B	Q9H9Y6	1135 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	NLRC4	Q9NPP4	1024 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	APOBEC3B	Q9UH17	382 aa	Known RBP	18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	DAAM1	Q9Y4D1	1078 aa		18.68	■□□□□ 0.58
HDAC6-231	ENST00000488905	COL6A6	A6NMZ7	2263 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	KDELR3	O43731	214 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	KRT3	P12035	628 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	TGM2	P21980	687 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	LSS	P48449	732 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	THOP1	P52888	689 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	CXADR	P78310	365 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	GDPD4	Q6W3E5	623 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	EFL1	Q7Z2Z2	1120 aa	Known RBP	18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	VPS36	Q86VN1	386 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	ZNF354C	Q86Y25	554 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	RBFA	Q8N0V3	343 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	LSM14A	Q8ND56	463 aa	Known RBP	18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	BTN2A2	Q8WVV5	523 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	CENPT	Q96BT3	561 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	NAF1	Q96HR8	494 aa	Known RBP	18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	IL12RB2	Q99665	862 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	ADAM22	Q9P0K1	906 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	SALL4	Q9UJQ4	1053 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	ZNF462	Q96JM2	2506 aa		18.67	■□□□□ 0.58
HDAC6-231	ENST00000488905	CPED1	A4D0V7	1026 aa		18.66	■□□□□ 0.58
HDAC6-231	ENST00000488905	EME2	A4GXA9	379 aa	Predicted RBP	18.66	■□□□□ 0.58
HDAC6-231	ENST00000488905	TPP1	O14773	563 aa		18.66	■□□□□ 0.58
HDAC6-231	ENST00000488905	BUB1	O43683	1085 aa		18.66	■□□□□ 0.58
HDAC6-231	ENST00000488905	IGSF6	O95976	241 aa		18.66	■□□□□ 0.58
HDAC6-231	ENST00000488905	TPM2	P07951	284 aa		18.66	■□□□□ 0.58
HDAC6-231	ENST00000488905	GPD1	P21695	349 aa		18.66	■□□□□ 0.58
HDAC6-231	ENST00000488905	RFC1	P35251	1148 aa	Predicted RBP	18.66	■□□□□ 0.58
HDAC6-231	ENST00000488905	ERVPABLB-1	P60509	514 aa		18.66	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms