RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	GSC	P56915	257 aa	Predicted RBP	8.96	□□□□□ -0.98
USP4-213	ENST00000488520	ATP11A	P98196	1134 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	SEMG2	Q02383	582 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	PTP4A2	Q12974	167 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	DNAJC3	Q13217	504 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	PIGH	Q14442	188 aa	Predicted RBP	8.96	□□□□□ -0.98
USP4-213	ENST00000488520	TRIP4	Q15650	581 aa	Predicted RBP	8.96	□□□□□ -0.98
USP4-213	ENST00000488520	SMAD1	Q15797	465 aa	Known RBP	8.96	□□□□□ -0.98
USP4-213	ENST00000488520	HADH	Q16836	314 aa	Known RBP	8.96	□□□□□ -0.98
USP4-213	ENST00000488520	CDO1	Q16878	200 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	ELOA3B	Q3SY89	546 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	ZFYVE27	Q5T4F4	411 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	ACBD5	Q5T8D3	534 aa	Predicted RBP	8.96	□□□□□ -0.98
USP4-213	ENST00000488520	SYPL2	Q5VXT5	272 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	NUGGC	Q68CJ6	796 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	PLEKHA7	Q6IQ23	1121 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	DNAAF5	Q86Y56	855 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	ELOA3	Q8NG57	546 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	OR2T3	Q8NH03	318 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	SLC35G2	Q8TBE7	412 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	IGSF8	Q969P0	613 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	PLD4	Q96BZ4	506 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	MYO19	Q96H55	970 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	SLC2A13	Q96QE2	648 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	UBL7	Q96S82	380 aa	Predicted RBP	8.96	□□□□□ -0.98
USP4-213	ENST00000488520	CNPY3	Q9BT09	278 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	TSGA10	Q9BZW7	698 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	BTBD1	Q9H0C5	482 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	FTSJ1	Q9UET6	329 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	TMEM59L	Q9UK28	342 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	TLR6	Q9Y2C9	796 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	RAI2	Q9Y5P3	530 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	AK5	Q9Y6K8	562 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	RP1	P56715	2156 aa		8.96	□□□□□ -0.98
USP4-213	ENST00000488520	TYW5	A2RUC4	315 aa	Known RBP	8.95	□□□□□ -0.98
USP4-213	ENST00000488520	TMEM191C	A6NGB0	347 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	CCP110	O43303	1012 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	TLX3	O43711	291 aa	Predicted RBP	8.95	□□□□□ -0.98
USP4-213	ENST00000488520	PRMT3	O60678	531 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	C1QL1	O75973	258 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	DNTT	P04053	509 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	EIF2S3	P41091	472 aa	Known RBP	8.95	□□□□□ -0.98
USP4-213	ENST00000488520	GRIA4	P48058	902 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	ZNF143	P52747	638 aa	Predicted RBP	8.95	□□□□□ -0.98
USP4-213	ENST00000488520	RPS14	P62263	151 aa	Known RBP	8.95	□□□□□ -0.98
USP4-213	ENST00000488520	CAMK2G	Q13555	558 aa	Predicted RBP	8.95	□□□□□ -0.98
USP4-213	ENST00000488520	EIF4H	Q15056	248 aa	Known RBP	8.95	□□□□□ -0.98
USP4-213	ENST00000488520	MSANTD2	Q6P1R3	559 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	LRRC31	Q6UY01	552 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	RAD9B	Q6WBX8	426 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	CHST9	Q7L1S5	443 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	STRADA	Q7RTN6	431 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	CPXM2	Q8N436	756 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	EMC1	Q8N766	993 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	ZNF564	Q8TBZ8	553 aa	Predicted RBP	8.95	□□□□□ -0.98
USP4-213	ENST00000488520	DQX1	Q8TE96	717 aa	Known RBP	8.95	□□□□□ -0.98
USP4-213	ENST00000488520	GANC	Q8TET4	914 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	PDLIM2	Q96JY6	352 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	CFAP57	Q96MR6	1250 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	TBCB	Q99426	244 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	MTG2	Q9H4K7	406 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	DMGDH	Q9UI17	866 aa	Known RBP	8.95	□□□□□ -0.98
USP4-213	ENST00000488520	ANAPC7	Q9UJX3	599 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	CFAP46	Q8IYW2	2715 aa		8.95	□□□□□ -0.98
USP4-213	ENST00000488520	C2CD4B	A6NLJ0	364 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	TMEM110-MUSTN1	A8MSY1	372 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	ENC1	O14682	589 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	TIMM44	O43615	452 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	PRPSAP2	O60256	369 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	PCDHGA12	O60330	932 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	GJB6	O95452	261 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	LDOC1	O95751	146 aa	Predicted RBP	8.94	□□□□□ -0.98
USP4-213	ENST00000488520	MOCS2	O96007	188 aa	Predicted RBP	8.94	□□□□□ -0.98
USP4-213	ENST00000488520	FYN	P06241	537 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	CD27	P26842	260 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	HOXD9	P28356	352 aa	Predicted RBP	8.94	□□□□□ -0.98
USP4-213	ENST00000488520	HLA-F	P30511	346 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	FLT3	P36888	993 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	CTSK	P43235	329 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	PTPN9	P43378	593 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	VAV2	P52735	878 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	C21orf59	P57076	290 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	RPL7A	P62424	266 aa	Known RBP	8.94	□□□□□ -0.98
USP4-213	ENST00000488520	MESD	Q14696	234 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	E2F5	Q15329	346 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	CCDC14	Q49A88	953 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	MPPE1	Q53F39	396 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	ZC3H12A	Q5D1E8	599 aa	Known RBP	8.94	□□□□□ -0.98
USP4-213	ENST00000488520	BRMS1L	Q5PSV4	323 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	TMEM164	Q5U3C3	297 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	LINC00114	Q6XXX2	140 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	BHLHA9	Q7RTU4	235 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	TMPRSS12	Q86WS5	348 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	JOSD2	Q8TAC2	188 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	FAM172A	Q8WUF8	416 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	RFFL	Q8WZ73	363 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	AZIN2	Q96A70	460 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	CNDP2	Q96KP4	475 aa	Known RBP	8.94	□□□□□ -0.98
USP4-213	ENST00000488520	SLC6A18	Q96N87	628 aa		8.94	□□□□□ -0.98
USP4-213	ENST00000488520	ZNF830	Q96NB3	372 aa	Predicted RBP	8.94	□□□□□ -0.98

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms